SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene168181

Length: 281 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene168181
AGGGATCAAACAGTGGAGGTGTGCTAGTGCGTTTTCACTCCCTACAAGGCTTTTTACCTTATTCTCAGATGAGTCCTTCTCATTTGATAAAAGTTGGGAGCAAGGTACTTTCAGAGGTTGCAAAAGACTTAATGGGTTCTACACTTTCCCTGAAGGTAATTGAAGTTAGTGAGGAAGAGGAGACATTGATTTTCTCTGAGAAGCAGGCAATGTGGGAAAAGTTTTCTATCAAGGTGGGAGATGTATTTCGAAGGAAGGGTCAGCTTAGTCGCTAGGTTGGT

Ace file of the UniGene sp_v3.0_unigene168181 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ribosomal protein S1-like RNA-binding domain-containing protein [Arabidopsis thaliana] dbj\|BAB01847.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK83625.1\| AT3g23700/MYM9_3 [Arabidopsis thaliana] gb\|AAM98102.1\| At3g23700/MYM9_3 [Arabidopsis thali	-	-	5.0e-18	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	Gene names
Sma3	At3g23700; GSVIVT00033518001; PHYPADRAFT_147942; POPTRDRAFT_246437; RCOM_1307020; VITISV_006784;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	0.0	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G23700.1	Nucleic acid-binding proteins superfamily chr3:8531689-8533742 REVERSE LENGTH=392	1.0e-23	54%
RefSeq	Arabidopsis thaliana	NP_566737.1	ribosomal protein S1-like RNA-binding domain-containing protein [Arabidopsis thaliana]	2.0e-23	54%
RefSeq	Populus trichocarpa	XP_002321102.1	predicted protein, partial [Populus trichocarpa]	8.0e-24	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXR9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 182 aas, your sequence is shorter than subject: 91 - 381

Fln protein: GSNSGGVLVRFHSLQGFLPYSQMSPSHLIKVGSKVLSEVAKDLMGSTLSLKVIEVSEEEETLIFSEKQAMWEKFSIKVGDVFRRKGQLSR*

Protein Length: 92

Fln nts: AGGGATCAAACAGTGGAGGTGTGCTAGTGCGTTTTCACTCCCTACAAGGCTTTTTACCTTATTCTCAGATGAGTCCTTCTCATTTGATAAAAGTTGGGAGCAAGGTACTTTCAGAGGTTGCAAAAGACTTAATGGGTTCTACACTTTCCCTGAAGGTAATTGAAGTTAGTGAGGAAGAGGAGACATTGATTTTCTCTGAGAAGCAGGCAATGTGGGAAAAGTTTTCTATCAAGGTGGGAGATGTATTTCGAAGGAAGGGTCAGCTTAGTCGCTAGGTTGGT

Fln Alignment:

HIF1XHV03FNGAE___GSNSGGVLVRFHSLQGFLPYSQMSPSHLIKVGSKVLSEVAKDLMGSTLSLKVIEVSEEEETLIFSEKQAMWEKFSIKVGDVF
A9NXR9________________GSNSGGVLVRFHSLQGFLPYSQMSPSLLLKDRSKTISESAKDLIGSTLSLKVIEVSEEENMLIFSEKQAMWEKFSINEGDVF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain