SustainPineDB

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Assembly info
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167780

Length: 209 nt

UniGene Fasta

>sp_v3.0_unigene167780
GCTGTTATGTGCATGGTGGCTGCAGCACTAACAGAGGAGAAGAGGATCCATGTAGCGAAAATTCATGGTTTACTTGACAGCCCGGGAACTACAATCCCTCTCAGTGTTTTCTGGTTAACTCCACAGTTTGTTCTAATGGGAATAGCAGATGTGTTTCTTGTAGTAGGATTGCAGGAATACTTCTATGATCAAGTCCCTGACAATATGAG

Ace file of the UniGene sp_v3.0_unigene167780

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Oligopeptide transporter, putative n=1 Tax=Ricinus communis RepID=B9S740_RICCO	-	-	7.0e-18	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Chromosome chr18 scaffold_122, whole genome shotgun sequence	-	-	7.993e-11	-

Source	Gene names
Sma3	At1g22540; At1g22550; F12K8.11; F12K8.12; GSVIVT00001821001; GSVIVT00001823001; GSVIVT00001832001; GSVIVT00001842001; GSVIVT00030928001; LOC_Os10g33210; OSJNBa0079L16.13; OSJNBb0008G24.13; OSJNBb0008G24.20; Os10g0470700; OsI_04608; OsI_04614; OsI_33979; O

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22540.1	Major facilitator superfamily protein chr1:7964202-7966222 FORWARD LENGTH=557	3.0e-22	59%
RefSeq	Arabidopsis thaliana	NP_173670.2	putative peptide/nitrate transporter [Arabidopsis thaliana]	4.0e-22	59%
RefSeq	Populus trichocarpa	XP_002325969.1	predicted protein, partial [Populus trichocarpa]	2.0e-22	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQ68

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 69 - 407

Fln protein: AVMCMVAAALTEEKRIHVAKIHGLLDSPGTTIPLSVFWLTPQFVLMGIADVFLVVGLQEYFYDQVPDNM

Protein Length: 70

Fln nts: GCTGTTATGTGCATGGTGGCTGCAGCACTAACAGAGGAGAAGAGGATCCATGTAGCGAAAATTCATGGTTTACTTGACAGCCCGGGAACTACAATCCCTCTCAGTGTTTTCTGGTTAACTCCACAGTTTGTTCTAATGGGAATAGCAGATGTGTTTCTTGTAGTAGGATTGCAGGAATACTTCTATGATCAAGTCCCTGACAATATGAG

Fln Alignment:

HIF1XHV03GRIUI___AVMCMVAAALTEEKRIHVAKIHGLLDSPGTTIPLSVFWLTPQFVLMGIADVFLVVGLQEYFYDQVPDNM
B8LQ68________________SLLCMVIAALTEKKRIHAAETHGLLDSPTTTIPMSAFWLVPQFVLAGIADVFTLVGLQEYFYNEAPDSM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain