SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167659

Length: 219 nt

UniGene Fasta

>sp_v3.0_unigene167659
CACCTCGACATCATGTTCAACAACGCAGGGGTTATTGAAAACCCTAACCCTAACCCTAATTCTGCTGGCGTTGTGGTATCAGAGTATGACATGGATGATTTCGACAGAGTGATGAATGTGAATGTGAAGGGGGCGATGTTGGGTATCAAGCACGCAGGCCGCGTGATGATTCCGAGGAAGGCAGGATCCATAATATGCACAGCGAGCATAGCGGGCATA

Ace file of the UniGene sp_v3.0_unigene167659

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	1.0e-15	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Sma3	Short chain alcohol dehydrogenase, putative	-	-	1.052e-06	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.1.1.10-	-	3.705e-06	-

Source	Gene names
Sma3	POPTRDRAFT_560966; POPTRDRAFT_577103; RCOM_0156780; RCOM_0556780;

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G03140.1	NAD(P)-binding Rossmann-fold superfamily protein chr4:1392191-1393662 FORWARD LENGTH=343	1.0e-17	52%
RefSeq	Arabidopsis thaliana	NP_567251.2	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	1.0e-17	52%
RefSeq	Populus trichocarpa	XP_002308240.1	predicted protein [Populus trichocarpa]	2.0e-21	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZX6

Fln msg: Distance to subject end: 126 aas, your sequence is shorter than subject: 73 - 290

Fln protein: HLDIMFNNAGVIENPNPNPNSAGVVVSEYDMDDFDRVMNVNVKGAMLGIKHAGRVMIPRKAGSIICTASIAGI

Protein Length: 74

Fln nts: CACCTCGACATCATGTTCAACAACGCAGGGGTTATTGAAAACCCTAACCCTAACCCTAATTCTGCTGGCGTTGTGGTATCAGAGTATGACATGGATGATTTCGACAGAGTGATGAATGTGAATGTGAAGGGGGCGATGTTGGGTATCAAGCACGCAGGCCGCGTGATGATTCCGAGGAAGGCAGGATCCATAATATGCACAGCGAGCATAGCGGGCATA

Fln Alignment:

HIF1XHV01BVA5S___LDIMFNNAGVIENPNPNPNSAGVVVSEYDMDDFDRVMNVNVKGAMLGIKHAGRVMIPRKAGSIICTASIAGI
A9NZX6________________LDIMYNNAGIIV--------AGKSVAEYDMEQFDRVMRVNVRGVMLGIKHAARVMIPRKKGCIISTASIAGI

SSRs (tot: 1)

Start position	End position	Sequence	Length
40	59	AACCCT AACCCT AACCCT AA	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain