SustainPineDB

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Assembly info
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SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167658

Length: 190 nt

UniGene Fasta

>sp_v3.0_unigene167658
AGCTGAGAGTCTTCTATTAAGCCTAAAGCAGAGATTTCCTGGATTGTCGCAGACTGTCCTGGATATGAGCAAGATCCAGTATAATATGGATGTTGGTCAATCCATCCTGGAAAGCTACTCAAGGGTATTGGAGAGTTTGGCTTTCAACATTATTGCTCGCATTGATGATTTGCTGTATGTGGATGACTTG

Ace file of the UniGene sp_v3.0_unigene167658

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rop guanine nucleotide exchange factor, putative n=1 Tax=Ricinus communis RepID=B9T764_RICCO	-	-	2.0e-23	90%
FL-Next	sp=Rop guanine nucleotide exchange factor 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	80%
Sma3	Rop guanine nucleotide exchange factor, putative	-	-	3.409e-23	-

Source	Gene names
Sma3	AT4g00460; AT4g13240; A_IG005I10.1; At1g01700; At1g79860; At2g45890; At3g24620; At3g55660; At4g13240; At4g38430; At5g02010; At5g19560; B0103C08-B0602B01.6; F17N18.130; F19K16.18; F1I16_70; F22I13.200; F5I10.1; F9I5.12; GSVIVT00015533001; GSVIVT00016724001

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apical plasma membrane	GO:0016324	Cellular Component	-
Sma3	Rho guanyl-nucleotide exchange factor activity	GO:0005089	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	pollen tube growth	GO:0009860	Biological Process	-
Sma3	response to antibiotic	GO:0046677	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant specific Rop nucleotide exchanger, PRONE	IPR005512	-	-
Sma3	TRAM/LAG1/CLN8 homology domain	IPR006634	-	-
Sma3	Erythromycin resistance leader peptide-2	IPR012559	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G02010.1	ATROPGEF7, ROPGEF7 RHO guanyl-nucleotide exchange factor 7 chr5:383493-385698 FORWARD LENGTH=546	2.0e-30	88%
RefSeq	Arabidopsis thaliana	NP_195821.1	RHO guanyl-nucleotide exchange factor 7 [Arabidopsis thaliana]	3.0e-30	88%
RefSeq	Populus trichocarpa	XP_002309095.1	predicted protein, partial [Populus trichocarpa]	1.0e-30	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93ZY2

Fln msg: Distance to subject end: 94 aas, your sequence is shorter than subject: 63 - 548

Fln protein: AESLLLSLKQRFPGLSQTVLDMSKIQYNMDVGQSILESYSRVLESLAFNIIARIDDLLYVDDL

Protein Length: 64

Fln nts: AGCTGAGAGTCTTCTATTAAGCCTAAAGCAGAGATTTCCTGGATTGTCGCAGACTGTCCTGGATATGAGCAAGATCCAGTATAATATGGATGTTGGTCAATCCATCCTGGAAAGCTACTCAAGGGTATTGGAGAGTTTGGCTTTCAACATTATTGCTCGCATTGATGATTTGCTGTATGTGGATGACTTG

Fln Alignment:

HIF1XHV01BI5HG___AESLLLSLKQRFPGLSQTVLDMSKIQYNMDVGQSILESYSRVLESLAFNIIARIDDLLYVDD
Q93ZY2________________AETLLQSLRIRFPGLPQTTLDMNKIQYNKDVGQSILESYSRVMESMAFNITARIDDVLYVDD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain