SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167636

Length: 190 nt

UniGene Fasta

>sp_v3.0_unigene167636
CAATCCTATTCTATATGTTTAACTCCCAAGTCATCTCTTTTCTCCTCTGTTGCATCACCTGAAGTATCACAGAAGGATTCAAATCCAGTTTCACCTGTGGAGGGTGCAGTTGCTAGTGAAGGCGAGGAAATTGTTGAGCCTGTCAGTCAAAATCAAGAGGAGCCTAAGGATACTGCACAAACACAGAAGG

Ace file of the UniGene sp_v3.0_unigene167636

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=GrpE protein homolog; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Sma3	adenyl-nucleotide exchange factor activity	GO:0000774	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	chaperone binding	GO:0051087	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GrpE nucleotide exchange factor	IPR000740	-	-
Sma3	GrpE nucleotide exchange factor, head	IPR009012	-	-
Sma3	GrpE nucleotide exchange factor, coiled-coil	IPR013805	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWL2

Fln msg: Distance to subject end: 204 aas, your sequence is shorter than subject: 63 - 322

Fln protein: QSYSICLTPKSSLFSSVASPEVSQKDSNPVSPVEGAVASEGEEIVEPVSQNQEEPKDTAQTQK

Protein Length: 64

Fln nts: CAATCCTATTCTATATGTTTAACTCCCAAGTCATCTCTTTTCTCCTCTGTTGCATCACCTGAAGTATCACAGAAGGATTCAAATCCAGTTTCACCTGTGGAGGGTGCAGTTGCTAGTGAAGGCGAGGAAATTGTTGAGCCTGTCAGTCAAAATCAAGAGGAGCCTAAGGATACTGCACAAACACAGAAGG

Fln Alignment:

HIF1XHV01A4J2V___QSYSICLTPKSSLFSSVASPEVSQKDSNPVSPVEGAVASEGEEIVEPVSQNQEEPKDTAQTQK
A9NWL2________________QPRSICLTPKSSLFSSVASPEVSQKESNPVSSVESTVASKGEEIVEPVSQNQ-EPKKAAQRKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain