SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167484

Length: 202 nt

UniGene Fasta

>sp_v3.0_unigene167484
CACATAGCTGGACCGGAAATCTCATCACTAATGCCACAAATAATGACTTTTGGCTAAATGAGGGTTTTACGACCTATGCAGAGCGAAGAATTGTGGAAGTTGTACAGGGCGAGGAGCGTGCAGCTTTGAACATTGGCTTAGGCTGCTCAGATTTGAAGGATGAGATGCTTAGATTCAAAGATAATATGGAATTTACCAAATT

Ace file of the UniGene sp_v3.0_unigene167484

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leukotriene-A4 hydrolase [Arabidopsis thaliana] emb\|CAC05429.1\| leukotriene-A4 hydrolase-like protein [Arabidopsis thaliana] gb\|AAL67031.1\| putative leukotriene-A4 hydrolase [Arabidopsis thaliana] gb\|AAM91766.1\| putative leukotriene-A4 hydrolase [Arabidop	-	-	1.0e-21	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Leukotriene A-4 hydrolase, putative	-	-	3.642e-09	-

Source	Gene names
Sma3	At5g13520; GSVIVT00029481001; LOC_Os03g60460; OJ1754_E06.9; Os03g0819100; OsI_14085; OsJ_13129; POPTRDRAFT_567536; POPTRDRAFT_832515; RCOM_1071080; RCOM_1071200; T6I14_50; VITISV_017527;

Source	GOs	Term	Type	Identity
Sma3	inositol or phosphatidylinositol kinase activity	GO:0004428	Molecular Function	-
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	leukotriene biosynthetic process	GO:0019370	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Phosphoinositide 3-kinase, accessory (PIK) domain	IPR001263	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Peptidase M1, leukotriene A4 hydrolase, aminopeptidase C-terminal	IPR015211	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G13520.1	peptidase M1 family protein chr5:4342117-4344571 REVERSE LENGTH=616	1.0e-27	75%
RefSeq	Arabidopsis thaliana	NP_196856.1	leukotriene-A4 hydrolase [Arabidopsis thaliana]	2.0e-27	75%
RefSeq	Populus trichocarpa	XP_002316336.1	predicted protein [Populus trichocarpa]	6.0e-30	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A828

Fln msg: Distance to subject end: 237 aas, your sequence is shorter than subject: 66 - 614

Fln protein: HSWTGNLITNATNNDFWLNEGFTTYAERRIVEVVQGEERAALNIGLGCSDLKDEMLRFKDNMEFTK

Protein Length: 67

Fln nts: CACATAGCTGGACCGGAAATCTCATCACTAATGCCACAAATAATGACTTTTGGCTAAATGAGGGTTTTACGACCTATGCAGAGCGAAGAATTGTGGAAGTTGTACAGGGCGAGGAGCGTGCAGCTTTGAACATTGGCTTAGGCTGCTCAGATTTGAAGGATGAGATGCTTAGATTCAAAGATAATATGGAATTTACCAAATT

Fln Alignment:

HIF1XHV01BI7CP___HSWTGNLITNATNNDFWLNEGFTTYAERRIVEVVQGEERAALNIGLGCSDLKDEMLRFKDNMEFTK
D5A828________________HSWTGNLITNATNNDFWLNEGFTTYAERRIVEVVQGEERAALNIGLGCSDLKNEMQRFKDNMEFTK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain