SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167476

Length: 162 nt

UniGene Fasta

>sp_v3.0_unigene167476
ATGTCAGGTCAAGATGGCCCCGCCCCTGGCCCTGGCCCTCCAGCAGATAAAGGGAAAAGGAAGGGCTTGCCTGCAAAGAATCTCATGGCAGAGCGTAGGCGCAGAAAGAAGCTTAACGATCGCCTCTACATGCTTCGCTCAGTTGTTCCCAAGATTTCAAAG

Ace file of the UniGene sp_v3.0_unigene167476

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Sma3	Inducer of CBF expression 1 protein	-	-	2.885e-08	-

Source	Gene names
Sma3	AMS; At1g12860; At2g16910; At3g26745; At5g10570; At5g65640; BHLH116; BHLH21; BHLH33; BHLH61; BHLH93; EN44; EN45; EN46; EN47; EN48; F12A24.9; F12B17.80; F13K23.12; GSVIVT00002687001; GSVIVT00006182001; GSVIVT00012512001; GSVIVT00015050001; GSVIVT0001770000

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	DVL	IPR012552	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G12860.1	SCRM2, ICE2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein chr1:4384758-4386392 FORWARD LENGTH=450	1.0e-13	96%
RefSeq	Arabidopsis thaliana	NP_172746.2	uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]	2.0e-13	96%
RefSeq	Populus trichocarpa	XP_002321747.1	predicted protein [Populus trichocarpa]	8.0e-14	100%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A934

Fln msg: Distance to subject end: 149 aas, your sequence is shorter than subject: 54 - 175

Fln protein: MSGQDGPAPGPGPPADKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISK

Protein Length: 55

Fln nts: _-_ATGTCAGGTCAAGATGGCCCCGCCCCTGGCCCTGGCCCTCCAGCAGATAAAGGGAAAAGGAAGGGCTTGCCTGCAAAGAATCTCATGGCAGAGCGTAGGCGCAGAAAGAAGCTTAACGATCGCCTCTACATGCTTCGCTCAGTTGTTCCCAAGATTTCAAAG

Fln Alignment:

HIF1XHV01B4P57___MAERRRRKKLNDRLYMLRSVVPKISK
D5A934________________MAERRRRKKLNDRLFMLRSVVPKVSK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain