SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167449

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene167449
GCATGGTGCTACGGAGTAATTTCTGTGACATTTTACAGTGTGGCAGTGACAGGGTATTGGGCGTTTGGAAACAATGTTCAGTCTAACATATTGAAAAGTTTCATGCCAAATGAAGGCCCAACTCTCGTGCCCAGTTGGCTCTTGGGTCTATCAGTAGTCTTCGTACTTTTGCAGCTACTTGCAATAGCATTGGTGTATTCCCAAGTCGCTT

Ace file of the UniGene sp_v3.0_unigene167449

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TVD7_VITVI	-	-	7.0e-23	75%
FL-Next	sp=Probable GABA transporter 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Sma3	Proline transporter	-	-	4.939e-08	-

Source	Gene names
Sma3	At5g41800; GSVIVT00002452001; OJ1007_H05.2; Os01g0621200; Os05g0586500; OsI_02902; OsI_21177; P0407B12.40; PHYPADRAFT_154626; POPTRDRAFT_180052; POPTRDRAFT_799999; PtrProT3; RCOM_1691270;

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G41800.1	Transmembrane amino acid transporter family protein chr5:16733842-16735888 FORWARD LENGTH=452	9.0e-27	69%
RefSeq	Arabidopsis thaliana	NP_568597.1	Transmembrane amino acid transporter family protein [Arabidopsis thaliana]	1.0e-26	69%
RefSeq	Populus trichocarpa	XP_002303637.1	proline transporter [Populus trichocarpa]	3.0e-28	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8L4X4

Fln msg: Distance to subject end: 123 aas, your sequence is shorter than subject: 70 - 452

Fln protein: AWCYGVISVTFYSVAVTGYWAFGNNVQSNILKSFMPNEGPTLVPSWLLGLSVVFVLLQLLAIALVYSQVA

Protein Length: 71

Fln nts: GCATGGTGCTACGGAGTAATTTCTGTGACATTTTACAGTGTGGCAGTGACAGGGTATTGGGCGTTTGGAAACAATGTTCAGTCTAACATATTGAAAAGTTTCATGCCAAATGAAGGCCCAACTCTCGTGCCCAGTTGGCTCTTGGGTCTATCAGTAGTCTTCGTACTTTTGCAGCTACTTGCAATAGCATTGGTGTATTCCCAAGTCGCTT

Fln Alignment:

HIF1XHV01B3G6Z___CYGVISVTFYSVAVTGYWAFGNNVQSNILKSFMPNEGPTLVPSWLLGLSVVFVLLQLLAIALVYSQVA
Q8L4X4________________CYSVIFFTFYSAAISGYWVFGNNSSSNILKNLMPDEGPTLAPIVVIGLAVIFVLLQLFAIGLVYSQVA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain