SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167376

Length: 349 nt

UniGene Fasta

>sp_v3.0_unigene167376
AACAAGGTGAAGAAACGGTATCCAAAGAGGGATCAATAATACAGCCATTCAAAATGAAGTTCAATACTAATGTCAGTTCCTCCAGAAGAAAGGCTAGAAAGGCTTACTTCACCGCTCCTAGCCACGAGAGACGTTTAGCCATGGCCTCCCCTTTATCTGCTGACTTAAAGCAAAAGTACAACGTCAAGAACATCCCAATCAGAAAGGATGACGAAGTTCAAGTCGTTAGAGGAACATACAAGGGAAGAGAAGGAAAGGTTATCCAAGTTTACAGAAAGAAATACGTTGTCTACATCGAAAGATTGACCAGAGAAAAGGCTAACGGAGCTACCGTCAACATTGGAGTCCA

Ace file of the UniGene sp_v3.0_unigene167376

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative L24 ribosomal protein [Ipomoea batatas]	-	-	9.0e-37	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	60S ribosomal protein L26	-	-	6.311e-11	-

Source	Gene names
Sma3	At3g49910; At5g67510; CHLREDRAFT_136811; F3A4.4; GSVIVT00002862001; GSVIVT00012534001; GSVIVT00019661001; GSVIVT00038278001; K9I9.7; LOC_Os11g05370; LOC_Os12g05430; MICPUCDRAFT_30848; MICPUN_91267; OSTLU_8655; Os01g0140500; Os11g0151300; Os12g0150100; OsI

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	large ribosomal subunit	GO:0015934	Cellular Component	-
Sma3	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L26/L24P, eukaryotic/archaeal	IPR005756	-	-
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L24/L26, conserved site	IPR005825	-	-
Sma3	Ribosomal protein L24, SH3-like	IPR014723	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G49910.1	Translation protein SH3-like family protein chr3:18504311-18504751 FORWARD LENGTH=146	72%
RefSeq	Arabidopsis thaliana	NP_190560.1	60S ribosomal protein L26-1 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002306341.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUP7

Fln msg: Distance to subject end: 48 aas, your sequence is shorter than subject: 98 - 147

Fln protein: MKFNTNVSSSRRKARKAYFTAPSHERRLAMASPLSADLKQKYNVKNIPIRKDDEVQVVRGTYKGREGKVIQVYRKKYVVYIERLTREKANGATVNIGV

Protein Length: 99

Fln nts: AACAAGGTGAAGAAACGGTATCCAAAGAGGGATCAATAATACAGCCATTCAAA_-_ATGAAGTTCAATACTAATGTCAGTTCCTCCAGAAGAAAGGCTAGAAAGGCTTACTTCACCGCTCCTAGCCACGAGAGACGTTTAGCCATGGCCTCCCCTTTATCTGCTGACTTAAAGCAAAAGTACAACGTCAAGAACATCCCAATCAGAAAGGATGACGAAGTTCAAGTCGTTAGAGGAACATACAAGGGAAGAGAAGGAAAGGTTATCCAAGTTTACAGAAAGAAATACGTTGTCTACATCGAAAGATTGACCAGAGAAAAGGCTAACGGAGCTACCGTCAACATTGGAGTCCA

Fln Alignment:

HIF1XHV01CCXQI___MKFNTNVSSSRRKARKAYFTAPSHERRLAMASPLSADLKQKYNVKNIPIRKDDEVQVVRGTYKGREGKVIQVYRKKYVVYIERLTREKANGATVNIGV
A9NUP7________________MKYNPRVSSSRRKSRKAHFTAPSSVRRILMSAPLSSDLRNKHNVRSIPIRKDDEVQVVRGTFKGREGKVVQVYRKKWVIHVERITREKVNGQTVNVGV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain