SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167285

Length: 270 nt

UniGene Fasta

>sp_v3.0_unigene167285
ATGGGGGATGAATGATAGAGGAGTATCATACACTTTTGGTCCTGATAGAGTCACTGACTTCCTTCAGAAGCATGATCTGGATCTCATATGTCGAGCTCATGAGGTTTTTAGTGTTTTGGATAAATTAGCATTGATAATCTATGGAGGAAATTATTGCAAATTATTATGTTACGGTGTTTATATGAATCGTGTATATCAAGATAGAGAAGATGCTGATAAATTCTAACTCTGCAGGTAGTGGAGGATGGCTATGAGTTCTTTGCTGATAGG

Ace file of the UniGene sp_v3.0_unigene167285

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein phosphatase (Fragment) n=1 Tax=Vitis vinifera RepID=E0CUE0_VITVI	-	-	2.0e-13	62%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Sma3	Serine/threonine protein phosphatase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	-

Source	Gene names
Sma3	46C02.14; AT2G39840; At1g64040; At2g39840; At4g11240; At5g59160; B1144B06.13; CHLREDRAFT_160030; F22C12.20; F8L21.30; GSVIVT00002202001; GSVIVT00002529001; GSVIVT00020252001; GSVIVT00024227001; GSVIVT00033624001; LOC_Os03g16110; MtrDRAFT_AC136139g21v2; NP

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39840.1	TOPP4 type one serine/threonine protein phosphatase 4 chr2:16627430-16628789 FORWARD LENGTH=321	3.0e-17	58%
RefSeq	Arabidopsis thaliana	NP_181514.1	serine/threonine-protein phosphatase PP1 isozyme 4 [Arabidopsis thaliana]	4.0e-17	58%
RefSeq	Populus trichocarpa	XP_002319103.1	predicted protein [Populus trichocarpa]	8.0e-18	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA89

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 17 aas, your sequence is shorter than subject: 75 - 325

Fln protein: WGMNDRGVSYTFGPDRVTDFLQKHDLDLICRAHEVFSVLDKLALIIYGGNYCKLLCYGVYMNRVYQDREDADKF*

Protein Length: 76

Fln nts: ATGGGGGATGAATGATAGAGGAGTATCATACACTTTTGGTCCTGATAGAGTCACTGACTTCCTTCAGAAGCATGATCTGGATCTCATATGTCGAGCTCATGAGGTTTTTAGTGTTTTGGATAAATTAGCATTGATAATCTATGGAGGAAATTATTGCAAATTATTATGTTACGGTGTTTATATGAATCGTGTATATCAAGATAGAGAAGATGCTGATAAATTCTAACTCTGCAGGTAGTGGAGGATGGCTATGAGTTCTTTGCTGATAGG

Fln Alignment:

HIF1XHV01AM1IM___WGMNDRGVSYTFGPDRVTDFLQKHDLDLICRAHEV------FSVLDKLALIIYGGNYC
D5AA89________________WGENDRGVSYTFGPDKVTEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain