UniGene Name: sp_v3.0_unigene167226
Length: 218 nt
UniGene Fasta |
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>sp_v3.0_unigene167226
A |
Ace file of the UniGene sp_v3.0_unigene167226 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Polyprotein n=2 Tax=Primula vulgaris RepID=A5X2S4_9ERIC | - | - | 5.0e-17 | 61% |
FL-Next | sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion. | - | - | 0.0 | 55% |
Source | Gene names |
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Sma3 | AtMg00860; F23H6.1; LOC_Os03g47840; OSIGBa0118P15.5; OSJNBa0041A02.23; OSJNBa0053B21.11; OSJNBa0088I22.10; OSJNBb0070O09.8; Os06g0493000; Os06g0570000; Os08g0451600; VITISV_003711; VITISV_013478; VITISV_017554; VITISV_026680; VITISV_035856; VITISV_044100; |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | chromatin | GO:0000785 | Cellular Component | 0.0 | - |
Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | mitochondrion | GO:0005739 | Cellular Component | 0.0 | - |
Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
Sma3 | chromatin binding | GO:0003682 | Molecular Function | 0.0 | - |
Sma3 | RNA binding | GO:0003723 | Molecular Function | 0.0 | - |
Sma3 | RNA-directed DNA polymerase activity | GO:0003964 | Molecular Function | 0.0 | - |
Sma3 | aspartic-type endopeptidase activity | GO:0004190 | Molecular Function | 0.0 | - |
Sma3 | endonuclease activity | GO:0004519 | Molecular Function | 0.0 | - |
Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
Sma3 | RNA-dependent DNA replication | GO:0006278 | Biological Process | 0.0 | - |
Sma3 | chromatin assembly or disassembly | GO:0006333 | Biological Process | 0.0 | - |
Sma3 | proteolysis | GO:0006508 | Biological Process | 0.0 | - |
Sma3 | DNA integration | GO:0015074 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Reverse transcriptase | IPR000477 | - | 0.0 | - |
Sma3 | Chromo domain/shadow | IPR000953 | - | 0.0 | - |
Sma3 | Integrase, catalytic core | IPR001584 | - | 0.0 | - |
Sma3 | Zinc finger, CCHC-type | IPR001878 | - | 0.0 | - |
Sma3 | Peptidase aspartic, active site | IPR001969 | - | 0.0 | - |
Sma3 | Intron-encoded nuclease 2 | IPR003611 | - | 0.0 | - |
Sma3 | Retrotransposon gag protein | IPR005162 | - | 0.0 | - |
Sma3 | Sugar transporter, conserved site | IPR005829 | - | 0.0 | - |
Sma3 | Peptidase aspartic, catalytic | IPR009007 | - | 0.0 | - |
Sma3 | Reverse transcriptase, RNA-dependent DNA polymerase | IPR013103 | - | 0.0 | - |
Sma3 | Retroviral aspartyl protease | IPR013242 | - | 0.0 | - |
Sma3 | Zinc finger, H2C2-type, histone UAS binding | IPR015416 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | ATMG00860.1 | ORF158 DNA/RNA polymerases superfamily protein chrM:235916-236392 FORWARD LENGTH=158 | 1.0e-20 | 55% |
RefSeq | Arabidopsis thaliana | NP_085542.1 | hypothetical protein ArthMp075 (mitochondrion) [Arabidopsis thaliana] | 1.0e-20 | 55% |
Full-Lengther Next Prediction |
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Fln status: Putative N-terminus
Fln database: sp_plants
Fln subject: P92523
Fln msg: Distance to subject end: 79 aas, atg_distance in limit (1-15): atg_distance = 6, W2: There is no M at the beginning, your sequence is shorter than subject: 72 - 158
Fln protein:
Q
Protein Length:
73
Fln nts:
A
Fln Alignment:
HIF1XHV01BNE48___VLTLLKEHYFYAKKSKCTFGKEEGEYL--RHIISKEGVKVDPNKIKAIWK*PKPVNISKLRGFLGLTGYYRR
P92523________________VLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRR
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain