SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167129

Length: 256 nt

UniGene Fasta

>sp_v3.0_unigene167129
AGCACTTTCGGTTGCCTTTAGGTTAGTCTTCATAGCAGTTGTGAGAGTGGTGACTAAAAGTCGATTAACCATGTTTGGGCGTGCACCAAAAAGAGTGACAACACAAAATATTATGACATTTTGGGTGTGTCAAAAAGTGCCACACCTGATGAGTTGAAGAAGGCTTATAGAAAAGCTGCCATCAAAAATCACCCTGACAAGGGTGGGATCCAGAAAATTCAAGATTGGCTCAGGCTTATGAAGTCTTGAGTGATCC

Ace file of the UniGene sp_v3.0_unigene167129

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperone protein dnaJ, putative n=2 Tax=fabids RepID=B9RQ46_RICCO	-	-	4.0e-15	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Sma3	DnaJ-like protein	-	-	1.034e-13	-

Source	Gene names
Sma3	A2; A3; ATJ; ATJ2; ATJ3; At3g44110; At5g22060; CHLREDRAFT_170453; DNAJ1; DNJ1; F26G5.60; GSVIVT00002640001; GSVIVT00019136001; GSVIVT00037272001; J3; LDJ2; LOC_Os03g44620; LOC_Os03g57340; MICPUCDRAFT_47362; MICPUN_97775; OSIGBa0134H18.3; OSJNBa0065H10.16;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Heat shock protein DnaJ, cysteine-rich domain	IPR001305	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Chaperone DnaJ, C-terminal	IPR002939	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3		IPR012287	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR014778	-	-
Sma3		IPR015609	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G44110.1	ATJ3, ATJ DNAJ homologue 3 chr3:15869115-15871059 REVERSE LENGTH=420	3.0e-17	80%
RefSeq	Arabidopsis thaliana	NP_850653.1	chaperone protein dnaJ 3 [Arabidopsis thaliana]	2.0e-17	80%
RefSeq	Populus trichocarpa	XP_002316479.1	predicted protein [Populus trichocarpa]	5.0e-18	90%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQA1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 359 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 64 - 421

Fln protein: KSINHVWACTKKSDNTKYYDILGVSKSATPDELKKAYRKAAIKNHPDKGGIQKIQDWLRLMKS*

Protein Length: 65

Fln nts: AGCACTTTCGGTTGCCTTTAGGTTAGTCTTCATAGCAGTTGTGAGAGTGGTGACTAAAAGTCGATTAACCATGTTTGGGCGTGCACCAAAAAGAGTGACAACACAAAATATTATGACATTTTGGGTGTGTCAAAAAGTGCCACACCTGATGAGTTGAAGAAGGCTTATAGAAAAGCTGCCATCAAAAATCACCCTGACAAGGGTGGGATCCAGAAAATTCAAGATTGGCTCAGGCTTATGAAGTCTTGAGTGATCC

Fln Alignment:

HIF1XHV01B0J8O___KKSDNTKYYDILGVSKSATPDELKKAYRKAAIKNHPDKGG
C0PQA1________________KKSDNTKYYDILGVSKSATPDELKKAYRKAAIKNHPDKGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain