SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167118

Length: 270 nt

UniGene Fasta

>sp_v3.0_unigene167118
GGTAGCTCTAATTCAGTGGTGGAGAAATTCTTGATGGAATATGCTCACGAAATGCCAACACGATACTCGCACTCTCACCTCAAGAAGATCACAAACAACTTTACAGAAAAGTTGGGAGAAGGAGGTTATGGTGTGGTGTATAAAGGAAAGCTCCGGAACGGTGCTCCCGTGGCTGTTAAGCTTCTCGACAGGCATAGGCACAGTGAGATTCAATTCATGAACGAAGTGGCTACCATTGGACGGGTTCATCACTTCAATTTGGTTCGTCTG

Ace file of the UniGene sp_v3.0_unigene167118

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like kinase (Fragment) n=1 Tax=Hordeum vulgare RepID=Q9SWU6_HORVU	-	-	1.0e-12	45%
FL-Next	sp=G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	50%
Sma3	Putative rust resistance kinase Lr10	-	-	6.218e-20	-

Source	Gene names
Sma3	GSVIVT00004128001; GSVIVT00004129001; GSVIVT00004956001; GSVIVT00004959001; GSVIVT00004961001; GSVIVT00004966001; GSVIVT00005131001; GSVIVT00005229001; GSVIVT00005230001; GSVIVT00005232001; GSVIVT00006441001; GSVIVT00006445001; GSVIVT00006446001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Ribonuclease T2, active site	IPR018188	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002333072.1	predicted protein, partial [Populus trichocarpa]	1.0e-16	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9XID3

Fln msg: Distance to subject end: 287 aas, your sequence is shorter than subject: 90 - 829

Fln protein: GSSNSVVEKFLMEYAHEMPTRYSHSHLKKITNNFTEKLGEGGYGVVYKGKLRNGAPVAVKLLDRHRHSEIQFMNEVATIGRVHHFNLVRL

Protein Length: 91

Fln nts: GGTAGCTCTAATTCAGTGGTGGAGAAATTCTTGATGGAATATGCTCACGAAATGCCAACACGATACTCGCACTCTCACCTCAAGAAGATCACAAACAACTTTACAGAAAAGTTGGGAGAAGGAGGTTATGGTGTGGTGTATAAAGGAAAGCTCCGGAACGGTGCTCCCGTGGCTGTTAAGCTTCTCGACAGGCATAGGCACAGTGAGATTCAATTCATGAACGAAGTGGCTACCATTGGACGGGTTCATCACTTCAATTTGGTTCGTCTG

Fln Alignment:

HLKU4M003HF3WR___LMEYAHEMPTRYSHSHLKKITNNFTXXXXXXXXXXXXXXXXRNGAPVAVKLLDRHRHSEIQFMNEVATIGRVHHFNLVRL
Q9XID3________________LLEYASGAPVQFTYKELQRCTKSFKEKLGAGGFGTVYRGVLTNRTVVAVKQLEGIEQGEKQFRMEVATISSTHHLNLVRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain