SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167020

Length: 217 nt

UniGene Fasta

>sp_v3.0_unigene167020
CTAGTCTTGATCCAGATAACGGGGAAGCATGGAACAACATTGCTTGCCTTCATATGATGAAGAAGAGGAACAAGGAAGCCTTTATCGCTTTTAAAGAAGCACTAAAGTTCAGGCGTAATAGTTGGCAGATGTGGGAGAACTATAGTCAAGTAGCAATGGACACTGGTAATTTTGGTCAGGCATTGGAAGCAATAAAGATGGTGCTGGATCTGACTAA

Ace file of the UniGene sp_v3.0_unigene167020

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetratricopeptide repeat-containing protein [Arabidopsis thaliana] dbj\|BAB10514.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED92407.1\| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	4.0e-26	74%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	85%

Source	Gene names
Sma3	At5g17270; At5g37130; GSVIVT00003656001; OSJNBa0075N02.133; Os07g0455100; OsJ_24118; PHYPADRAFT_233508; POPTRDRAFT_714237; RCOM_1604230;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G17270.1	Protein prenylyltransferase superfamily protein chr5:5679995-5685597 FORWARD LENGTH=899	2.0e-32	74%
RefSeq	Arabidopsis thaliana	NP_197229.1	tetratricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-32	74%
RefSeq	Populus trichocarpa	XP_002305241.1	predicted protein [Populus trichocarpa]	1.0e-30	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HGI8

Fln msg: Distance to subject end: 200 aas, your sequence is shorter than subject: 71 - 923

Fln protein: SLDPDNGEAWNNIACLHMMKKRNKEAFIAFKEALKFRRNSWQMWENYSQVAMDTGNFGQALEAIKMVLDLT

Protein Length: 72

Fln nts: CTAGTCTTGATCCAGATAACGGGGAAGCATGGAACAACATTGCTTGCCTTCATATGATGAAGAAGAGGAACAAGGAAGCCTTTATCGCTTTTAAAGAAGCACTAAAGTTCAGGCGTAATAGTTGGCAGATGTGGGAGAACTATAGTCAAGTAGCAATGGACACTGGTAATTTTGGTCAGGCATTGGAAGCAATAAAGATGGTGCTGGATCTGACTAA

Fln Alignment:

HLKU4M003GRQ1D___LDPDNGEAWNNIACLHMMKKRNKEAFIAFKEALKFRRNSWQMWENYSQVAMDTGNFGQALEAIKMVLDLT
F6HGI8________________LDPQNGEAWNNIACLHMIKKKSKESFIAFKEALKFKRNSWQLWENYSQVAADVGNFGQALEAILMVLDLT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain