SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167008

Length: 140 nt

UniGene Fasta

>sp_v3.0_unigene167008
CGGTTTTGGTTTCTACCATCAGATTTTCAACAAGGTGAAAATTATCGAATTATCTATGTACATGTTCCTGCAGCTTGGATGAGTATACTTGTTTATATTGCAGTGGCTATCAGCAGTTTTTTAGTTCTTATTAACAAAAC

Ace file of the UniGene sp_v3.0_unigene167008

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative cytochrome c biosynthesis ccmC-like mitochondrial protein n=2 Tax=Marchantiophyta RepID=CCMC_MARPO	-	-	2.0e-13	79%
FL-Next	sp=Putative cytochrome c biosynthesis ccmC-like mitochondrial protein; Marchantia polymorpha (Liverwort) (Marchantia aquatica). Mitochondrion.	-	-	0.0	79%
Sma3	Cytochrome c biogenesis C	-	-	1.071e-17	-

Source	Gene names
Sma3	At2g07681; AtMg00900; CCB256; CCB3; CCMC; PHYPADRAFT_146726; POPTRDRAFT_938191; POPTRDRAFT_939011; YMF5; ccb248; ccmC; orf496; orf518; ppabci13; yejU;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	mitochondrial membrane	GO:0031966	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	heme transporter activity	GO:0015232	Molecular Function	-
Sma3	respiratory chain complex IV assembly	GO:0008535	Biological Process	-
Sma3	heme transport	GO:0015886	Biological Process	-
Sma3	cytochrome complex assembly	GO:0017004	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cytochrome c assembly protein	IPR002541	-	0.0	-
Sma3	Cytochrome c-type biogenesis protein CcmC	IPR003557	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00900.1	CCB256 cytochrome C biogenesis 256 chrM:239988-240758 REVERSE LENGTH=256	4.0e-12	68%
RefSeq	Arabidopsis thaliana	NP_973435.1	putative cytochrome c biosynthesis ccmC-like mitochondrial protein [Arabidopsis thaliana]	6.0e-12	68%
RefSeq	Populus trichocarpa	XP_002333311.1	predicted protein [Populus trichocarpa]	1.0e-11	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P38453

Fln msg: Distance to subject end: 145 aas, your sequence is shorter than subject: 46 - 228

Fln protein: RFWFLPSDFQQGENYRIIYVHVPAAWMSILVYIAVAISSFLVLINK

Protein Length: 47

Fln nts: CGGTTTTGGTTTCTACCATCAGATTTTCAACAAGGTGAAAATTATCGAATTATCTATGTACATGTTCCTGCAGCTTGGATGAGTATACTTGTTTATATTGCAGTGGCTATCAGCAGTTTTTTAGTTCTTATTAACAAAAC

Fln Alignment:

HLKU4M003FRA62___WFLPSDFQQGENYRIIYVHVPAAWMSILVYIAVAISSFLVLINK
P38453________________WVAPSDFQQGENYRIIYVHVPAAWMSLLIYIAMAISSVLFLLTK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain