SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene167001

Length: 153 nt

UniGene Fasta

>sp_v3.0_unigene167001
ACGCAGGTGATAGTGATGGACGCACAAAACAAGTTGCATCATTTATCTTCCACCCAATTCTCCCCTTTGCAATATCAATTCAACAAGCATTTATGCAACCATTGGTGGTTAATATTCATCTACGAAGATAAATCAAATGCCTAATCCACATAG

Ace file of the UniGene sp_v3.0_unigene167001

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam09737, Det1, De-etiolated protein 1 Det1	-	-	2.0e-11	38%
FL-Next	sp=Light-mediated development protein DET1; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	0.0	65%
Sma3	Protein DEETIOLATED 1	-	-	8.772e-06	-

Source	Gene names
Sma3	At4g10180; DET1; F28M11.100; RCOM_1300050; T9A4.13;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	red, far-red light phototransduction	GO:0009585	Biological Process	-
Sma3	red or far-red light signaling pathway	GO:0010017	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	De-etiolated protein 1, Det1	IPR019138	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G10180.1	DET1, FUS2, ATDET1 light-mediated development protein 1 / deetiolated1 (DET1) chr4:6346543-6349146 FORWARD LENGTH=543	2.0e-11	66%
RefSeq	Arabidopsis thaliana	NP_192756.2	Light-mediated development protein DET1 [Arabidopsis thaliana]	2.0e-11	66%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9ZNU6

Fln msg: your sequence is shorter than subject: 43 - 523

Fln protein: AGDSDGRTKQVASFIFHPILPFAISIQQAFMQPLVVNIHLRR*

Protein Length: 44

Fln nts: ACGCAGGTGATAGTGATGGACGCACAAAACAAGTTGCATCATTTATCTTCCACCCAATTCTCCCCTTTGCAATATCAATTCAACAAGCATTTATGCAACCATTGGTGGTTAATATTCATCTACGAAGATAA___ATCAAATGCCTAATCCACATAG

Fln Alignment:

HLKU4M003HKAX3___AGDSDGRTKQVASFIFHPILPFAISIQQA-FMQPLVVNIHLRR
Q9ZNU6________________AGSTDGRTKKICSFLFHPILPLALSVQQTLFLQASVVNIHFRR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain