SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166841

Length: 210 nt

UniGene Fasta

>sp_v3.0_unigene166841
TTCAACCAATGCTTCGAGGAGCTCTATCAAAAACAAACGCAGTGGATAGTTCCAGATGTTGAACTTCGGGAATCACTAAGACTAGCAGTTGCAGAAGTGTTATTGCCTGCCTATCGATCCTACATAAAGCGTTTTGGTGCACCAATACAAAGTGGAAGAAATCCTAATAAGTACATCAAATACATGCCTGAAGATTTGGAACAAAAGTTG

Ace file of the UniGene sp_v3.0_unigene166841

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9RSB7_RICCO	-	-	6.0e-24	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Emb\|CAB83315.1	-	-	4.755e-09	-

Source	Gene names
Sma3	At5g03540; At5g52350; F12E4_320; GSVIVT00013809001; GSVIVT00017936001; GSVIVT00021515001; H0723C07.2; H0913C04.13; LOC_Os11g05880; LOC_Os12g06270; OJ1344_B01.18; OSJNBa0088H09.17; OSJNBa0088H09.18; Os04g0685600; Os09g0439600; Os11g0157400; Os12g0159700; O

Source	GOs	Term	Type	Identity
Sma3	exocyst	GO:0000145	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	exocytosis	GO:0006887	Biological Process	-
Sma3	lateral root morphogenesis	GO:0010102	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Exo70 exocyst complex subunit	IPR004140	-	-
Sma3		IPR015706	-	-
Sma3	Glycoside hydrolase, family 11, active site	IPR018208	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G03540.3	EXO70A1 exocyst subunit exo70 family protein A1 chr5:889606-893916 FORWARD LENGTH=664	2.0e-28	71%
RefSeq	Arabidopsis thaliana	NP_001119162.1	exocyst subunit exo70 family protein A1 [Arabidopsis thaliana]	1.0e-28	71%
RefSeq	Populus trichocarpa	XP_002315422.1	predicted protein [Populus trichocarpa]	7.0e-29	74%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWM1

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 70 - 647

Fln protein: FNQCFEELYQKQTQWIVPDVELRESLRLAVAEVLLPAYRSYIKRFGAPIQSGRNPNKYIKYMPEDLEQKL

Protein Length: 71

Fln nts: TTCAACCAATGCTTCGAGGAGCTCTATCAAAAACAAACGCAGTGGATAGTTCCAGATGTTGAACTTCGGGAATCACTAAGACTAGCAGTTGCAGAAGTGTTATTGCCTGCCTATCGATCCTACATAAAGCGTTTTGGTGCACCAATACAAAGTGGAAGAAATCCTAATAAGTACATCAAATACATGCCTGAAGATTTGGAACAAAAGTTG

Fln Alignment:

HLKU4M003HBPAV___FNQCFEELYQKQTQWIVPDVELRESLRLAVAEVLLPAYRSYIKRFGAPIQSGRNPNKYIKYMPEDLEQKL
A9NWM1________________FNMQFEELHQRQTQWTVPDNELRESLRLAVAEVLLPAYRQFLKRFGSLLDNGKNPQKYIKYTAEDLDRML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain