SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166650

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene166650
GAAGCTGCAGTGTCAGAAAATAAAGATCCTGAGGTGATGTTTAGTCTTGCGTTGGAAAATGCTGAGCAACGTAATCTAAACATAGCACTGGACTGTGCAAAGAAGTATTTTGGCTATGATGGCAGGGGCTTCATTAAAAGGTTGGAAGCTCTTGGCCCTTGTTTTGTCAGCACAACAGCATTTTTCTGATGCTGAAATTATCATTGATGCTGCCTTCGACGAGACAGGAAAATGGCA

Ace file of the UniGene sp_v3.0_unigene166650

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gb\|AAO14644.1\|AF474176_1 pollen-specific calmodulin-binding protein [Arabidopsis thaliana] gb\|ACI49798.1\| At2g43040 [Arabidopsis thaliana] gb\|AEC10202.1\| tetratricopeptide repeat-containin	-	-	5.0e-12	70%
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	70%

Source	Gene names
Sma3	At2g43040; NPG; POPTRDRAFT_754337; RCOM_1466650;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G43040.1	NPG1 tetratricopeptide repeat (TPR)-containing protein chr2:17896049-17898524 REVERSE LENGTH=704	3.0e-14	70%
RefSeq	Arabidopsis thaliana	NP_850382.1	tetratricopeptide repeat-containing protein [Arabidopsis thaliana]	4.0e-14	70%
RefSeq	Populus trichocarpa	XP_002300857.1	predicted protein [Populus trichocarpa]	6.0e-16	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1M8T9

Fln msg: Separated hits, possible frame ERROR between 93 and 116, Distance to subject end: 200 aas, your sequence is shorter than subject: 79 - 710

Fln protein: EAAVSENKDPEVMFSLALENAEQRNLNIALxxxxxxxxxMMAGASLKGWKLLALVLSAQQHFSDAEIIIDAAFDETGKW

Protein Length: 80

Fln nts: GAAGCTGCAGTGTCAGAAAATAAAGATCCTGAGGTGATGTTTAGTCTTGCGTTGGAAAATGCTGAGCAACGTAATCTAAACATAGCACTGGAxxxxxxxxxxxxxxxxxxxxxxxxTATGATGGCAGGGGCTTCATTAAAAGGTTGGAAGCTCTTGGCCCTTGTTTTGTCAGCACAACAGCATTTTTCTGATGCTGAAATTATCATTGATGCTGCCTTCGACGAGACAGGAAAATGGCA

Fln Alignment:

HLKU4M003GWEOG___EAAVSENKDPEVMFSLALENAEQRNLNIALDxxxxxxxxMMAGASLKGWKLLALVLSAQQHFSDAEIIIDAAFDETG
I1M8T9________________DAALNGNNDPEVMFSLGLENAIQRNLNAAYDxxxxxxxxMMAGSSRRGWQLLALIVSAQQRFQDAKTIVDFALDEAG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain