SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166176

Length: 253 nt

UniGene Fasta

>sp_v3.0_unigene166176
ATACCATTTTGGATCAAATTCAGGGACTGTTGGGGAAATATCTATTAGGCTGTTGTTTTTTATCAGGAAATCAGTCAGCAGATCTGCTTTTCTCATTTAAAAGTACCATTTCAGCTTGGATTGTCCAAAATGGATCTCCGAAAAATGTTGAAATCTAGCCTTTCTGGGGTGGAGAAGTCTCTTCAAACAATGTATAGAAAGATGCAAAAGAACCTGACCTCAGAGGAGCTGCTTCCTTCATTATGGGATAAAT

Ace file of the UniGene sp_v3.0_unigene166176

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	exocyst complex component sec3B [Arabidopsis thaliana] sp\|Q9SX86.1\|SEC3B_ARATH RecName: Full=Exocyst complex component SEC3B gb\|AAD46030.1\|AC007519_15 Strong similarity to F16N3.18 from Arabidopsis thalian BAC gb\|AC007519 [Arabidopsis thaliana] gb\|AEE3218	-	-	3.0e-16	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	Gene names
Sma3	At1g47550; At1g47560; F16N3.17; F16N3.18; GSVIVT00014702001; LOC_Os03g42750; LOC_Os11g17600; Os11g0276000; OsI_35792; OsJ_11791; OsJ_33622; PHYPADRAFT_178580; POPTRDRAFT_644177; POPTRDRAFT_677766; RCOM_1593330; SEC3A; SEC3B; rth1;

Source	GOs	Term	Type	Identity
Sma3	exocyst	GO:0000145	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	exocytosis	GO:0006887	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G47560.1	SEC3B exocyst complex component sec3B chr1:17466751-17473190 FORWARD LENGTH=887	8.0e-21	78%
RefSeq	Arabidopsis thaliana	NP_175187.3	exocyst complex component sec3B [Arabidopsis thaliana]	1.0e-20	78%
RefSeq	Populus trichocarpa	XP_002326906.1	predicted protein [Populus trichocarpa]	7.0e-24	82%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACT1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 39 aas, your sequence is shorter than subject: 84 - 201

Fln protein: IPFWIKFRDCWGNIY*AVVFYQEISQQICFSHLKVPFQLGLSKMDLRKMLKSSLSGVEKSLQTMYRKMQKNLTSEELLPSLWDK

Protein Length: 85

Fln nts: ATACCATTTTGGATCAAATTCAGGGACTGTTGGGGAAATATCTATTAGGCTGTTGTTTTTTATCAGGAAATCAGTCAGCAGATCTGCTTTTCTCATTTAAAAGTACCATTTCAGCTTGGATTGTCCAAAATGGATCTCCGAAAAATGTTGAAATCTAGCCTTTCTGGGGTGGAGAAGTCTCTTCAAACAATGTATAGAAAGATGCAAAAGAACCTGACCTCAGAGGAGCTGCTTCCTTCATTATGGGATAAAT

Fln Alignment:

HLKU4M003FPY7Q___KVPFQLGLSKMDLRKMLKSSLSGVEKSLQTMYRKMQKNLTSEELLPSLWDK
D5ACT1________________EVPFQLGLSKMDLRKMLKSSLSGVEKSLQTMYKKMQKNLTSEELLPSLWDK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain