SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene166049

Length: 351 nt

UniGene Fasta

>sp_v3.0_unigene166049
ACAGAGACCTGTTGTAATATACGCCGACGGTGTCTACGACCTTTTTCTACTACGGTCACGCCTTACAGTTGCGCCAGGCAAAACTCTCGTTCCCGTCGACCCGCTTGCTAGTTGGGGTCTGTTCCGACGAGCTCGTTCGTGAGCACAAGGGGAACACCGTAATGAATCACCAAGAGAGATGTGAGAACGTTCGTCACTGCAAGTGGGCGGACGAAGTCATTCCAGAAGCTCCCTGGGTCCTCACGCCGAAGTTCCTTGAGAAGTACAAGATTGATTACGTCGCCCATGATGAGGACCCTTACGCAGCACAGGGGCACGATGACGTCTATATTGGCCCAAAGCGAGAAGGAA

Ace file of the UniGene sp_v3.0_unigene166049

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Choline-phosphate cytidylyltransferase, putative n=3 Tax=Filobasidiella/Cryptococcus neoformans species complex RepID=E6QXM8_CRYGW	-	-	5.0e-35	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Choline-phosphate cytidylyltransferase B	-	-	1.249e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Choline-phosphate cytidylyltransferase.	EC:2.7.7.15	-	7.931e-19	-

Source	KEGGs	Term	e value	Identity
Sma3	Phosphonate and phosphinate metabolism	00440	7.931e-19	%
Sma3	Glycerophospholipid metabolism	00564	7.931e-19	%
Sma3	Metabolic pathways	01100	7.931e-19	%

Source	Gene names
Sma3	AT4g15130; At2g32260; AtCCT2; CCT; CPCT; GSVIVT00030122001; GSVIVT00037567001; LOC_Os10g42790; OSJNBa0056G17.15; OSJNBa0073A21.13; Os02g0173500; Os08g0161800; Os10g0578900; OsI_06041; OsI_27913; OsI_34790; OsJ_05570; OsJ_26135; OsJ_32595; P0577B11.124; PH

Source	GOs	Term	Type	Identity
Sma3	choline-phosphate cytidylyltransferase activity	GO:0004105	Molecular Function	-
Sma3	nucleotidyltransferase activity	GO:0016779	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G15130.1	ATCCT2, CCT2 phosphorylcholine cytidylyltransferase2 chr4:8637793-8639388 FORWARD LENGTH=304	3.0e-36	60%
RefSeq	Arabidopsis thaliana	NP_193249.5	phosphorylcholine cytidylyltransferase2 [Arabidopsis thaliana]	3.0e-36	60%
RefSeq	Populus trichocarpa	XP_002326446.1	predicted protein, partial [Populus trichocarpa]	2.0e-35	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AEI5

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 142 aas, your sequence is shorter than subject: 116 - 305

Fln protein: RDLL*YTPTVSTTFFYYGHALQLRQAKLSFPSTRLLVGVCSDELVREHKGNTVMNHQERCENVRHCKWADEVIPEAPWVLTPKFLEKYKIDYVAHDEDPYAAQGHDDVYIGPKREG

Protein Length: 117

Fln nts: ACAGAGACCTGTTGTAATATACGCCGACGGTGTCTACGACCTTTTTCTACTACGGTCACGCCTTACAGTTGCGCCAGGCAAAACTCTCGTTCCCGTCGACCCGCTTGCTAGTTGGGGTCTGTTCCGACGAGCTCGTTCGTGAGCACAAGGGGAACACCGTAATGAATCACCAAGAGAGATGTGAGAACGTTCGTCACTGCAAGTGGGCGGACGAAGTCATTCCAGAAGCTCCCTGGGTCCTCACGCCGAAGTTCCTTGAGAAGTACAAGATTGATTACGTCGCCCATGATGAGGACCCTTACGCAGCACAGGGGCACGATGACGTCTATATTGGCCCAAAGCGAGAAGGAA

Fln Alignment:

HLKU4M003FV5ZK___FYYGHALQLRQAKLSFPSTRLLVGVCSDELVREHKGNTVMNHQERCENVRHCKWADEVIPEAPWVLTPKFLEKYKIDYVAHDEDPYA
D5AEI5________________FHFGHARALEQAKKAFPNTYLLVGCCNDAVTHMYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVITPEFIDKYQIDYVAHDPLPYA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain