SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165983

Length: 395 nt

UniGene Fasta

>sp_v3.0_unigene165983
AGACCTTGAGAATAACTTCCTTGCAAGTTTTCTTCTTGGTTGGGGTAGTACAGTTGGTTCTAGTTTTATTGCATATCCTTGCGATACTATACGCAGAAGAATGATGATGACTTCTGGTGAGGCAGTTCAGTACAAGAGTTCCATGGATGCATTCTCACAGATAGTCAAAAATGAAGGTTTCAAGTCACTCTACAAGGGCGCAGGTGCAAATATCTTGCGTTCTGTTGCTGCGGCCGGTGCCTTAGCTGGATATGACCGGTTGCAGTTAATTCTTCTCCGCAAAAAATATGGCTCTGGCGGTAGCGGCTAATATTATAAATTTGATGATGGCGATAAATTTTAAACATTGATGGCTGAATACTAATTTTTAGGATTTCAGCAATGAATCTGGCTCA

Ace file of the UniGene sp_v3.0_unigene165983

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP,ATP carrier protein, putative n=1 Tax=Ricinus communis RepID=B9RVW7_RICCO	-	-	1.0e-33	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	ADP,ATP carrier protein	-	-	3.588e-21	-

Source	Gene names
Sma3	AAC; ABT; ANT; ANT-G1; ANT-G2; ANT1; ANT2; AT3G08580; AT4g28390; At3g08580; At4g28390; At4g28390/F20O9_60; At5g13490; At5g17400; CHLREDRAFT_196520; F20O9.60; GSVIVT00000009001; GSVIVT00018612001; GSVIVT00024630001; GSVIVT00028814001; LOC_Os02g48720; LOC_O

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	endoplasmic reticulum membrane	GO:0005789	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	ATP:ADP antiporter activity	GO:0005471	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	purine nucleotide transport	GO:0015865	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G28390.1	AAC3, ATAAC3 ADP/ATP carrier 3 chr4:14041486-14042781 REVERSE LENGTH=379	1.99993e-41	75%
RefSeq	Arabidopsis thaliana	NP_194568.1	ADP/ATP carrier 3 protein [Arabidopsis thaliana]	1.99993e-41	75%
RefSeq	Populus trichocarpa	XP_002327912.1	predicted protein [Populus trichocarpa]	8.00001e-41	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVC6

Fln msg: your sequence is shorter than subject: 103 - 390

Fln protein: DLENNFLASFLLGWGSTVGSSFIAYPCDTIRRRMMMTSGEAVQYKSSMDAFSQIVKNEGFKSLYKGAGANILRSVAAAGALAGYDRLQLILLRKKYGSGGSG*

Protein Length: 104

Fln nts: AGACCTTGAGAATAACTTCCTTGCAAGTTTTCTTCTTGGTTGGGGTAGTACAGTTGGTTCTAGTTTTATTGCATATCCTTGCGATACTATACGCAGAAGAATGATGATGACTTCTGGTGAGGCAGTTCAGTACAAGAGTTCCATGGATGCATTCTCACAGATAGTCAAAAATGAAGGTTTCAAGTCACTCTACAAGGGCGCAGGTGCAAATATCTTGCGTTCTGTTGCTGCGGCCGGTGCCTTAGCTGGATATGACCGGTTGCAGTTAATTCTTCTCCGCAAAAAATATGGCTCTGGCGGTAGCGGCTAA___TATTATAAATTTGATGATGGCGATAAATTTTAAACATTGATGGCTGAATACTAATTTTTAGGATTTCAGCAATGAATCTGGCTCA

Fln Alignment:

HLKU4M003FNXJE___DLENNFLASFLLGWGSTVGSSFIAYPCDTIRRRMMMTSGEAVQYKSSMDAFSQIVKNEGFKSLYKGAGANILRSVAAAGALAGYDRLQLILL
A9NVC6________________DLQDNFLASFLLGWGITIGAGLASYPIDTVRRRMMMTSGEAVKYKSSLDAFNQIVKNEGTKSLFKGAGANILRAIAGAGVLAGYDQLQLILL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain