SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165955

Length: 117 nt

UniGene Fasta

>sp_v3.0_unigene165955
CAACTCGAAGATGGCCGAACACTTGCTGACTACAATATTCAGAAGGAATCCACCTTGCACCTTGTGCTCCGTCTGAGAGGTGGCATGCAGATTTGTTGTAAAACCTCTACTGGGAAA

Ace file of the UniGene sp_v3.0_unigene165955

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin family protein n=1 Tax=Trichinella spiralis RepID=E5RYR3_TRISP	-	-	1.0e-11	92%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	92%

Source	Gene names
Sma3	ACU2; AT5G03240; At1g55060; At2g36170; At3g09790; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; At5g37640; B1472F02.6; CHLREDRAFT_140045; EgUbi; F11F8_38; F8A24.16; FUBI1; GSVIVT00035709001; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170; MICPUCDRAFT_1

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-
Sma3	Ribosomal protein L40e	IPR001975	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G05050.1	UBQ11 ubiquitin 11 chr4:2588271-2588960 REVERSE LENGTH=229	2.0e-17	92%
RefSeq	Arabidopsis thaliana	NP_001190681.1	ubiquitin 11 [Arabidopsis thaliana]	1.0e-17	92%
RefSeq	Populus trichocarpa	XP_002305607.1	predicted protein [Populus trichocarpa]	2.0e-17	92%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 39 - 229

Fln protein: QLEDGRTLADYNIQKESTLHLVLRLRGGMQICCKTSTGK

Protein Length: 40

Fln nts: CAACTCGAAGATGGCCGAACACTTGCTGACTACAATATTCAGAAGGAATCCACCTTGCACCTTGTGCTCCGTCTGAGAGGTGGCATGCAGATTTGTTGTAAAACCTCTACTGGGAAA

Fln Alignment:

HLKU4M003G2GNJ___QLEDGRTLADYNIQKESTLHLVLRLRGGMQICCKTSTGK
Q7FPA4________________QLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain