SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165655

Length: 369 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene165655
TATCCCTCCGGACCAGCAACGTCTCATCTTTGCCGGAAAGCAGCTTGAAGACGGCAGGACCTTGAGCGACTACAATATCCAAAAGGAGTCGACGCTCCATCTCGTCCTTCGTCTCCGTGGTGGCATCATCGAGCCTTCGCTGAAAGCTCTCGCTTCCAAGTACAACTGCGAGAAGCAAATCTGCCGCAAGTGCTATGCCCGCCTACCCCCGCGTGCTACCAACTGCCGCAAGCGTGCATGCGGTCATTCGAGCCAACTTCGCCCTAAGAAGAAGTTAAAGTAGTGGCTACGCGTTTCTTCGCTCTCGGGCATTTCTGGGTTATGCCATGTCCCTGTATCCGTATGCGTATGAATCGATCAACTATGCAC

Ace file of the UniGene sp_v3.0_unigene165655 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L40 n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9S759_VERA1	-	-	7.9874e-44	95%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	CEP52	-	-	3.796e-07	-

Source	Gene names
Sma3	ACU2; AT5G03240; At1g55060; At2g36170; At4g02890; At4g05050; At4g05320; At5g03240; At5g20620; B1472F02.6; CHLREDRAFT_140045; CHLREDRAFT_195594; EgUbi; FUBI1; GSVIVT00037199001; GUBQ1; GUbB1; GUbB2; H0303G06.8; LOC_Os03g13170; LOC_Os03g15370; LpUBQ; MICPUC

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	superoxide dismutase activity	GO:0004784	Molecular Function	-
Sma3	nickel cation binding	GO:0016151	Molecular Function	-
Sma3	antioxidant activity	GO:0016209	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-
Sma3	Superoxide dismutase, Nickel-type	IPR014123	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G52590.1	UBQ1, EMB2167, ERD16, HAP4 ubiquitin extension protein 1 chr3:19505668-19506681 FORWARD LENGTH=128	86%
RefSeq	Arabidopsis thaliana	NP_566969.1	60S ribosomal protein L40-2 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002321972.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP57

Fln msg: your sequence is shorter than subject: 94 - 128

Fln protein: IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRACGHSSQLRPKKKLK*

Protein Length: 95

Fln nts: TATCCCTCCGGACCAGCAACGTCTCATCTTTGCCGGAAAGCAGCTTGAAGACGGCAGGACCTTGAGCGACTACAATATCCAAAAGGAGTCGACGCTCCATCTCGTCCTTCGTCTCCGTGGTGGCATCATCGAGCCTTCGCTGAAAGCTCTCGCTTCCAAGTACAACTGCGAGAAGCAAATCTGCCGCAAGTGCTATGCCCGCCTACCCCCGCGTGCTACCAACTGCCGCAAGCGTGCATGCGGTCATTCGAGCCAACTTCGCCCTAAGAAGAAGTTAAAGTAG___TGGCTACGCGTTTCTTCGCTCTCGGGCATTTCTGGGTTATGCCATGTCCCTGTATCCGTATGCGTATGAATCGATCAACTATGCAC

Fln Alignment:

HLKU4M003FYB30___IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKRACGHSSQLRP
B8LP57________________IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain