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UniGene Name: sp_v3.0_unigene165598
Length: 202 nt
 UniGene Fasta
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| >sp_v3.0_unigene165598
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Ace file of the UniGene sp_v3.0_unigene165598
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | DUF659 domain containing protein | - | - | 1.0e-25 | 58% |
| FL-Next | tr=Putative uncharacterized protein; Vitis vinifera (Grape). | - | - | 0.0 | 60% |
| Sma3 | Chromosome chr9 scaffold_90, whole genome shotgun sequence | - | - | 4.188e-06 | - |
| Source | Gene names |
|---|---|
| Sma3 | GSVIVT00000858001; GSVIVT00001531001; GSVIVT00014165001; GSVIVT00024230001; GSVIVT00029236001; GSVIVT00037518001; GSVIVT00037637001; GSVIVT00037638001; VITISV_000096; VITISV_002077; VITISV_003657; VITISV_006607; VITISV_009803; VITISV_015895; VITISV_015896 |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | intracellular | GO:0005622 | Cellular Component | 0.0 | - |
| Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
| Sma3 | ubiquitin thiolesterase activity | GO:0004221 | Molecular Function | 0.0 | - |
| Sma3 | hydrolase activity, hydrolyzing O-glycosyl compounds | GO:0004553 | Molecular Function | 0.0 | - |
| Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
| Sma3 | protein dimerization activity | GO:0046983 | Molecular Function | 0.0 | - |
| Sma3 | carbohydrate metabolic process | GO:0005975 | Biological Process | 0.0 | - |
| Sma3 | ubiquitin-dependent protein catabolic process | GO:0006511 | Biological Process | 0.0 | - |
| Sma3 | DNA integration | GO:0015074 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Glycoside hydrolase, family 1 | IPR001360 | - | 0.0 | - |
| Sma3 | Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 | IPR001578 | - | 0.0 | - |
| Sma3 | Integrase, catalytic core | IPR001584 | - | 0.0 | - |
| Sma3 | Zinc finger, BED-type predicted | IPR003656 | - | 0.0 | - |
| Sma3 | Sugar transporter, conserved site | IPR005829 | - | 0.0 | - |
| Sma3 | Domain of unknown function DUF659 | IPR007021 | - | 0.0 | - |
| Sma3 | Zinc finger, C2H2 | IPR007087 | - | 0.0 | - |
| Sma3 | HAT dimerisation | IPR008906 | - | 0.0 | - |
| Sma3 | IPR011523 | - | 0.0 | - | |
| Sma3 | Reverse transcriptase, RNA-dependent DNA polymerase | IPR013103 | - | 0.0 | - |
| Sma3 | Glycoside hydrolase, subgroup, catalytic domain | IPR013781 | - | 0.0 | - |
| Sma3 | IPR015706 | - | 0.0 | - | |
| Sma3 | Zinc finger, C2H2-like | IPR015880 | - | 0.0 | - |
| Sma3 | ABC transporter, integral membrane type 1 | IPR017940 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT3G17450.1 | hAT dimerisation domain-containing protein chr3:5972793-5975684 REVERSE LENGTH=877 | 4.0e-15 | 47% |
| RefSeq | Arabidopsis thaliana | NP_188371.1 | hAT dimerization domain-containing protein [Arabidopsis thaliana] | 6.0e-15 | 47% |
| RefSeq | Populus trichocarpa | XP_002329897.1 | predicted protein, partial [Populus trichocarpa] | 1.0e-16 | 50% |
| Full-Lengther Next Prediction |
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Fln status: Putative C-terminus
Fln database: tr_plants
Fln subject: A5BLW8
Fln msg: STOP codon was not found. Distance to subject end: 6 aas, your sequence is shorter than subject: 67 - 254
Fln protein:
A
Protein Length:
68
Fln nts:
T
Fln Alignment:
HLKU4M003GYLQZ___LLDGFIREVGVQNVVQVITDNAANYVSVGKMLMERHRTLF*TPCAAHCLNLLLEEMGKLS
A5BLW8________________LKEEVVEEIGEENVVQVITDNASNYVNAGMRLMERRRRLWWTPCAAHCIDLMLEDIGKLN
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
