SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165378

Length: 146 nt

UniGene Fasta

>sp_v3.0_unigene165378
GCTTGCAAAAGAATGCATTCTGTTCTTTTGTTACGTGCATATGCAGCCCACCCGAGGTGATCTTAAAAAGAATATTTCAGGTTAAGCAGCTTCACTTAGGGCATGTTGCAAAGAGCTTTGGGCTAAAAGACCAGCCTTCGTTGGTT

Ace file of the UniGene sp_v3.0_unigene165378

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ATP-dependent RNA helicase [Oryza sativa]	-	-	1.0e-06	58%
FL-Next	sp=DEAD-box ATP-dependent RNA helicase 17; Oryza sativa subsp. japonica (Rice).	-	-	0.0	58%

Source	Gene names
Sma3	GSVIVT00016395001;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0DLB9

Fln msg: Distance to subject end: 30 aas, your sequence is shorter than subject: 48 - 591

Fln protein: LQKNAFCSFVTCICSPPEVILKRIFQVKQLHLGHVAKSFGLKDQPSLV

Protein Length: 49

Fln nts: GCTTGCAAAAGAATGCATTCTGTTCTTTTGTTACGTGCATATGCAGCCCACCCGAGGTGATCTTAAAAAGAATATTTCAGGTTAAGCAGCTTCACTTAGGGCATGTTGCAAAGAGCTTTGGGCTAAAAGACCAGCCTTCGTTGGTT

Fln Alignment:

HLKU4M003FV526___LQKNAFCSFVTCICSPPEVILKRIFQVKQLHLGHVAKSFGLKDQPSLV
Q0DLB9________________LARDAFCSWVRAYTAHRGE-LKKIFMVKKLHLGHVARSFGLKEQPSLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain