SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165233

Length: 151 nt

UniGene Fasta

>sp_v3.0_unigene165233
TTGGCATCTTTAAAATTACAAAAGACCAACTAGATAGCCTTAAGGCCAAGGCCACAGAGAATGACAATCAGGTAAAATACAGTAGTTATGAAATGCTGGCAGGTCACATTTGGAGATGTGTTTGCAAAGCTGGAAATCTGAGGGAAGATAG

Ace file of the UniGene sp_v3.0_unigene165233

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Hydroxycinnamoyl-CoA:shikimate hydroxycinnamoyltransferase n=2 Tax=Pinaceae RepID=A6Y879_PINRA	-	-	4.0e-13	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Sma3	Putative acyltransferase	-	-	1.402e-08	-

Source	Gene names
Sma3	AT5G48930; At5g48930; CtSQHCT4; CtSQHCT6; HCQ7; HCT; POPTRDRAFT_554899;

Source	GOs	Term	Type	Identity
Sma3		GO:0008415	Molecular Function	-
Sma3	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	-
Sma3	shikimate O-hydroxycinnamoyltransferase activity	GO:0047172	Molecular Function	-
Sma3	quinate O-hydroxycinnamoyltransferase activity	GO:0047205	Molecular Function	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	positive regulation of flavonoid biosynthetic process	GO:0009963	Biological Process	-
Sma3	auxin homeostasis	GO:0010252	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Transferase	IPR003480	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G48930.1	HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase chr5:19836654-19838092 REVERSE LENGTH=433	5.0e-14	64%
RefSeq	Arabidopsis thaliana	NP_199704.1	hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase [Arabidopsis thaliana]	6.0e-14	64%
RefSeq	Populus trichocarpa	XP_002303858.1	hydroxycinnamoyl CoA shikimate/quinate hydroxycinnamoyltransferase [Populus trichocarpa]	8.0e-16	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNE0

Fln msg: Distance to subject end: 158 aas, your sequence is shorter than subject: 49 - 433

Fln protein: GIFKITKDQLDSLKAKATENDNQVKYSSYEMLAGHIWRCVCKAGNLRED

Protein Length: 50

Fln nts: TTGGCATCTTTAAAATTACAAAAGACCAACTAGATAGCCTTAAGGCCAAGGCCACAGAGAATGACAATCAGGTAAAATACAGTAGTTATGAAATGCTGGCAGGTCACATTTGGAGATGTGTTTGCAAAGCTGGAAATCTGAGGGAAGATAG

Fln Alignment:

HA8LWWM01AQNIU___IFKITKDQLDSLKAKATENDNQVKYSSYEMLAGHIWRCVCKAGNLRED
B8LNE0________________IFKLTKEQLDILKGKARENGNKVSYSSYEMLSGHIWRCACKARNLTED

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain