SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165077

Length: 239 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene165077
GCTGCTTTTGTGAAGGAGGAGGATGTTGCAACATTTACCATGAAGACATTGGATGACCCTACAACTCTCAACAAGTCCCTCTATATAATGCCTCCTAGCAACATTTTTTCAGTGAATGAGCTTGTAAGTCTATGGGAGAAGATTATTGGCAAAACTCTGGAGAAGGTTTATGTATCAGATGAAGAGTTGCAGAAAAATATTGCAGGTTAGAATTTGGAAACACCTTTTTTAGTAGATTG

Ace file of the UniGene sp_v3.0_unigene165077 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	phenylcoumaran benzylic ether reductase homolog TH6 [Tsuga heterophylla]	-	-	1.0e-18	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Phenylcoumaran benzylic ether reductase	-	-	2.8e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on the CH-CH group of donors, With NAD(+) or NADP(+) as acceptor.	EC:1.3.1.-	-	4.16e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Fatty acid biosynthesis	00061		4.16e-09	%
Sma3	Phenylalanine metabolism	00360		4.16e-09	%
Sma3	Chlorocyclohexane and chlorobenzene degradation	00361		4.16e-09	%
Sma3	Fluorobenzoate degradation	00364		4.16e-09	%
Sma3	Tryptophan metabolism	00380		4.16e-09	%
Sma3	Xylene degradation	00622		4.16e-09	%
Sma3	Toluene degradation	00623		4.16e-09	%
Sma3	Polycyclic aromatic hydrocarbon degradation	00624		4.16e-09	%
Sma3	Propanoate metabolism	00640		4.16e-09	%
Sma3	Isoflavonoid biosynthesis	00943		4.16e-09	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		4.16e-09	%
Sma3	Metabolic pathways	01100		4.16e-09	%
Sma3	2'-hydroxyisoflavone reductase.	EC:1.3.1.45	-	3.199e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Isoflavonoid biosynthesis	00943	3.199e-06	%
Sma3	Biosynthesis of phenylpropanoids	01061	3.199e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	3.199e-06	%

Source	Gene names
Sma3	A622; A622L; AT4g39230; At1g75280; At1g75290; At1g75300; At1g75300/F22H5_16; At4g39230; BETV6; BETV6.0102; DDCBER1; F22H5.16; F22H5.17; F22H5.18; GSVIVT00014594001; GSVIVT00036356001; GSVIVT00036358001; GSVIVT00036360001; GSVIVT00036361001; GSVIVT00036363

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	regulation of nitrogen utilization	GO:0006808	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cecropin	IPR000875	-	-
Sma3	NmrA-like	IPR008030	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G39230.1	NmrA-like negative transcriptional regulator family protein chr4:18266024-18267604 REVERSE LENGTH=308	7.0e-23	61%
RefSeq	Arabidopsis thaliana	NP_195634.1	NmrA-like negative transcriptional regulator family protein [Arabidopsis thaliana]	9.0e-23	61%
RefSeq	Populus trichocarpa	XP_002313788.1	phenylcoumaran benzylic ether reductase 3 [Populus trichocarpa]	5.0e-25	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NZG3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 46 aas, your sequence is shorter than subject: 70 - 307

Fln protein: AAFVKEEDVATFTMKTLDDPTTLNKSLYIMPPSNIFSVNELVSLWEKIIGKTLEKVYVSDEELQKNIAG*

Protein Length: 71

Fln nts: GCTGCTTTTGTGAAGGAGGAGGATGTTGCAACATTTACCATGAAGACATTGGATGACCCTACAACTCTCAACAAGTCCCTCTATATAATGCCTCCTAGCAACATTTTTTCAGTGAATGAGCTTGTAAGTCTATGGGAGAAGATTATTGGCAAAACTCTGGAGAAGGTTTATGTATCAGATGAAGAGTTGCAGAAAAATATTGCAGGTTAGAATTTGGAAACACCTTTTTTAGTAGATTG

Fln Alignment:

HA8LWWM01CF3I6___AFVKEEDVATFTMKTLDDPTTLNKSLYIMPPSNIFSVNELVSLWEKIIGKTLEKVYVSDEELQKNIAG*NLETPF
A9NZG3________________AFVKEEDVATFTIKAVDDPRTLNKSMYIMLPTNIYSVNELVSLWEKKIGKTLEKVYISEEGLLKKIA----EAPF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain