SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene165044

Length: 176 nt

UniGene Fasta

>sp_v3.0_unigene165044
GTTATGTTTCTCATTTTTCTTTCAACTTGTAGATGCTTGGTGGACAAGCTATGGTGGCAAAGTACCCCATCTACAAAAGCTTGGCATTCGAGTGCTCAACCAAACATAGAGTTCCTCTGGATGTGAGCACAACTGGAGTGTATTTGACAAAATACACATCAAAAAGCGCAACAGGT

Ace file of the UniGene sp_v3.0_unigene165044

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH	-	-	1.0e-11	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	Gene names
Sma3	VITISV_009724; VITISV_021604;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	HAT dimerisation	IPR008906	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G33406.1	hAT dimerisation domain-containing protein / transposase-related chr5:12676126-12678403 REVERSE LENGTH=509	6.0e-13	52%
RefSeq	Arabidopsis thaliana	NP_680299.4	hAT family dimerization domain-containing protein [Arabidopsis thaliana]	7.0e-13	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8W4

Fln msg: Distance to subject end: 172 aas, your sequence is shorter than subject: 58 - 478

Fln protein: LCFSFFFQLVDAWWTSYGGKVPHLQKLGIRVLNQT*SSSGCEHNWSVFDKIHIKKRNR

Protein Length: 59

Fln nts: GTTATGTTTCTCATTTTTCTTTCAACTTGTAGATGCTTGGTGGACAAGCTATGGTGGCAAAGTACCCCATCTACAAAAGCTTGGCATTCGAGTGCTCAACCAAACATAGAGTTCCTCTGGATGTGAGCACAACTGGAGTGTATTTGACAAAATACACATCAAAAAGCGCAACAGGT

Fln Alignment:

HA8LWWM01EDYQA___QLVDAWWTSYGGKVPHLQKLGIRVLNQT*SSSGCEHNWSVFDKIHIKKRNR
D5A8W4________________RMFDTWWENYGATTPILQKMAIRVLSQTCSSSGCERNWSVFEKIHTKKRNR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain