SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164839

Length: 324 nt

UniGene Fasta

>sp_v3.0_unigene164839
AGATAGAACCATTGACAGAGCAACAGTATCAATGCATTTATAGTCTGCAGCAGTCTTCACTCCAAGCAGAAGAAGCCTTTTCGCAGGGCATGGAAGAGCTACAACACACTATTTCCGAGACCATAGCTGCAGGATCCCTCAGCTCACCTTCAAACATGGCCAACTACATGGGGCAAATGGCTGTCGCCATGGGAAAACTTGCCAATTTAGAAATTTTGGCTGATAGTCTAAGACACCAGACATTGCAACAACTACACAGAATCCTCACCACGCGCCAGTCAGCCAAATGCTTGCTTTCAATAGGAGAATACAACTCTCGACTTC

Ace file of the UniGene sp_v3.0_unigene164839

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to TGA-type basic leucine zipper protein TGA2.1	-	-	2.0e-28	63%
FL-Next	sp=TGACG-sequence-specific DNA-binding protein TGA-2.1; Nicotiana tabacum (Common tobacco).	-	-	0.0	63%
Sma3	BZIP transcription factor	-	-	3.934e-20	-

Source	Gene names
Sma3	80A08_2; AT5G65210; At1g08320; At1g22070; At1g68640; At1g68640/F24J5_9; At3g12250; At5g06839; At5g06960; At5g10030; At5g65210; AtbZIP21; AtbZIP65; B1085F09.3; BZIP22; BZIP26; BZIP45; BZIP47; BZIP57; CdR15; F24J5.12; F2E2.14; GSVIVT00000647001; GSVIVT00015

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	GTPase activator activity	GO:0005096	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to xenobiotic stimulus	GO:0009410	Biological Process	-
Sma3	defense response, incompatible interaction	GO:0009814	Biological Process	-
Sma3	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	-
Sma3	defense response to bacterium	GO:0042742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	DNA/RNA non-specific endonuclease, active site	IPR018524	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G12250.4	-	7.0e-33	58%
RefSeq	Arabidopsis thaliana	NP_001078141.1	transcription factor TGA6 [Arabidopsis thaliana]	5.0e-33	58%
RefSeq	Populus trichocarpa	XP_002307972.1	predicted protein [Populus trichocarpa]	4.0e-37	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O24160

Fln msg: Distance to subject end: 16 aas, your sequence is shorter than subject: 107 - 456

Fln protein: IEPLTEQQYQCIYSLQQSSLQAEEAFSQGMEELQHTISETIAAGSLSSPSNMANYMGQMAVAMGKLANLEILADSLRHQTLQQLHRILTTRQSAKCLLSIGEYNSRL

Protein Length: 108

Fln nts: AGATAGAACCATTGACAGAGCAACAGTATCAATGCATTTATAGTCTGCAGCAGTCTTCACTCCAAGCAGAAGAAGCCTTTTCGCAGGGCATGGAAGAGCTACAACACACTATTTCCGAGACCATAGCTGCAGGATCCCTCAGCTCACCTTCAAACATGGCCAACTACATGGGGCAAATGGCTGTCGCCATGGGAAAACTTGCCAATTTAGAAATTTTGGCTGATAGTCTAAGACACCAGACATTGCAACAACTACACAGAATCCTCACCACGCGCCAGTCAGCCAAATGCTTGCTTTCAATAGGAGAATACAACTCTCGACTTC

Fln Alignment:

HA8LWWM01BNKUU___IEPLTEQQYQCIYSLQQSSLQAEEAFSQGMEELQHTISETIAAGSLS---SPSNMANYMGQMAVAMGKLANLEIL---ADSLRHQTLQQLHRILTTRQSAKCLLSIGEYNSRL
O24160________________LEPLTEQQLAGIYNLQQSSHQAEDALSQGMEALQQSLAETLANGSPAPEGSSGDVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRVLTTRQSARALLAINEYFSRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain