SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene164723

Length: 134 nt

UniGene Fasta

>sp_v3.0_unigene164723
AGTTGCCCGTCAGGAGGGCATAACAGCCCTCTACAAGGGCCTCTCACCAGCCCTTATCCGCCACACATTTTACACTACCATCCGCATATTCTCCTACGAGCAACTCCGCAACACAGCAGCTTCTGGCAATAAAG

Ace file of the UniGene sp_v3.0_unigene164723

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial substrate carrier family protein [Arabidopsis thaliana] gb\|AAD39300.1\|AC007576_23 Similar to mitochondrial carrier proteins [Arabidopsis thaliana] gb\|AAM61005.1\| putative mitochondrial uncoupling protein [Arabidopsis thaliana] gb\|ABG48467.1\|	-	-	7.0e-07	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G14140.1	Mitochondrial substrate carrier family protein chr1:4838131-4839602 REVERSE LENGTH=305	5.0e-11	66%
RefSeq	Arabidopsis thaliana	NP_172866.1	Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	6.0e-11	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2P8

Fln msg: Distance to subject end: 192 aas, your sequence is shorter than subject: 44 - 301

Fln protein: VARQEGITALYKGLSPALIRHTFYTTIRIFSYEQLRNTAASGNK

Protein Length: 45

Fln nts: AGTTGCCCGTCAGGAGGGCATAACAGCCCTCTACAAGGGCCTCTCACCAGCCCTTATCCGCCACACATTTTACACTACCATCCGCATATTCTCCTACGAGCAACTCCGCAACACAGCAGCTTCTGGCAATAAAG

Fln Alignment:

HA8LWWM01CHUCK___VARQEGITALYKGLSPALIRHTFYTTIRIFSYEQLRNTAASGNK
A9P2P8________________IARQEGITALYKGLPPALVRHTFYTTIRIFSYEQLRDTAASGHQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain