SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163926

Length: 185 nt

UniGene Fasta

>sp_v3.0_unigene163926
AGAGGCGGATGTTGTCCAATAGGGAATCCGCCCGGCGGTCCCGCATGAGAAAACAGAAGCATCTGGACGAGCTCCGCGCTCAGGTAGGCGCACATGAGAGCTGAGAACAGGCAAATTCTCAGCAGTTTCGACATACTCAGTCAGCGTTACAGCCAGATTTTGGAAGAGAATCGTGTCTTGAAGAC

Ace file of the UniGene sp_v3.0_unigene163926

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	bZIP transcription factor BZI-2 [Nicotiana tabacum]	-	-	6.0e-09	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	BZIP transcription factor	-	-	1.263e-11	-

Source	Gene names
Sma3	AT1G75390; AT4g34590; ATB2; At1g75390; At2g18160; At4g34590; At5g15830; At5g15830/F14F8_210; BZI-1; F14F8_210; F1B16.8; G/HBF-1; GBF6; GSVIVT00023833001; POPTRDRAFT_294737; POPTRDRAFT_715285; POPTRDRAFT_729825; PPI1; RCOM_0484650; RCOM_1448130; T4L20.170;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Basic-leucine zipper domain	IPR004827	-	-
Sma3	bZIP transcription factor, bZIP-1	IPR011616	-	-
Sma3	Basic leucine zipper	IPR011700	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLW5

Fln msg: Separated hits, possible frame ERROR between 83 and 88, Distance to subject end: 58 aas, your sequence is shorter than subject: 61 - 173

Fln protein: RRMLSNRESARRSRMRKQKHLDELRAxxxAHMRAENRQILSSFDILSQRYSQILEENRVLK

Protein Length: 62

Fln nts: AGAGGCGGATGTTGTCCAATAGGGAATCCGCCCGGCGGTCCCGCATGAGAAAACAGAAGCATCTGGACGAGCTCCGCGCTCAxxxxxxGGCGCACATGAGAGCTGAGAACAGGCAAATTCTCAGCAGTTTCGACATACTCAGTCAGCGTTACAGCCAGATTTTGGAAGAGAATCGTGTCTTGAAGAC

Fln Alignment:

HA8LWWM01DENMY___RRMLSNRESARRSRMRKQKHLDELRAQxxAHMRAENRQILSSFDILSQRYSQILEENRVLK
B8LLW5________________KRMLSNRESARRSRMRKQQHLDELRAExxAHLRAENNHMLTKFNIASHKYMQLEEENSLLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain