SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163224

Length: 229 nt

UniGene Fasta

>sp_v3.0_unigene163224
AGATCTTACTCTTGGTATACCAAACCATTCAGATGCAAGTGCCCTCACCGTGTTAATGCAAAACGATGTCAGTGGCCTGCAAGTAATCAAGAATGGAAAATGGGTTGCTGTAGAACCCATAGCAAACGCGTTTGTGGTCAATTTGGGAGATCAACTGCAGGTTGTGAGCAATGGGAGATTCAGGAGTGTGGGAGCATCGAGCAGTAACAAATATGTAACAGTGCACGCA

Ace file of the UniGene sp_v3.0_unigene163224

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] gb\|AAD03424.1\| contains similarity to Iron/Ascorbate family of oxidoreductases (Pfam: PF00671, Score=307.1, E=2.2e-88, N=1) [Arabidopsis thaliana] emb\|CAB40042.1\| putative flavanon	-	-	1.0e-17	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	1-aminocyclopropane-1-carboxylate oxidase, putative	-	-	1.573e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Flavanone 3-dioxygenase.	EC:1.14.11.9	-	5.452e-06	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	5.452e-06	%
Sma3	Biosynthesis of phenylpropanoids	01061	5.452e-06	%
Sma3	Metabolic pathways	01100	5.452e-06	%
Sma3	Biosynthesis of secondary metabolites	01110	5.452e-06	%

Source	Gene names
Sma3	AT4g10490; AT4g10500; At4g10490; At4g10500; F3H7.16; F3H7.17; F7L13.70; F7L13.80; FLS; GA20ox2; GSVIVT00000476001; GSVIVT00000477001; GSVIVT00006399001; GSVIVT00006402001; GSVIVT00007513001; GSVIVT00018086001; GSVIVT00026183001; GSVIVT00033948001; GSVIVT0

Source	GOs	Term	Type	e value	Identity
Sma3	iron ion binding	GO:0005506	Molecular Function	0.0	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Isopenicillin N synthase	IPR002283	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G10490.1	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein chr4:6483900-6485179 FORWARD LENGTH=348	1.0e-23	60%
RefSeq	Arabidopsis thaliana	NP_192787.1	oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana]	2.0e-23	60%
RefSeq	Populus trichocarpa	XP_002300519.1	predicted protein [Populus trichocarpa]	4.0e-23	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQK0

Fln msg: Distance to subject end: 58 aas, your sequence is shorter than subject: 76 - 312

Fln protein: DLTLGIPNHSDASALTVLMQNDVSGLQVIKNGKWVAVEPIANAFVVNLGDQLQVVSNGRFRSVGASSSNKYVTVHA

Protein Length: 77

Fln nts: AGATCTTACTCTTGGTATACCAAACCATTCAGATGCAAGTGCCCTCACCGTGTTAATGCAAAACGATGTCAGTGGCCTGCAAGTAATCAAGAATGGAAAATGGGTTGCTGTAGAACCCATAGCAAACGCGTTTGTGGTCAATTTGGGAGATCAACTGCAGGTTGTGAGCAATGGGAGATTCAGGAGTGTGGGAGCATCGAGCAGTAACAAATATGTAACAGTGCACGCA

Fln Alignment:

HA8LWWM01DXXW2___DLTLGIPNHSDASALTVLMQNDVSGLQVIKNGKWVAVEPIANAFVVNLGDQLQVVSNGRFRSV
A9NQK0________________DLTLGAANHSDASAITVLMQSDVSGLQVFKNGKWIAVEPIANALVVNLGDQLQVVSNGRFRSV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain