SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162082

Length: 121 nt

UniGene Fasta

>sp_v3.0_unigene162082
AAACATGCAGCGACGGGTAATGGTTCCCAGGAGAGATGGGTGCATTATTTCTACGGCAAGTGTTGCAGGTATTCTGGGAGGACTTGGACCTCATGCATACACCGCTATCAAAACATGCAAT

Ace file of the UniGene sp_v3.0_unigene162082

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tasselseed2-like short-chain dehydrogenase/reductase [Anomochloa marantoidea]	-	-	1.0e-06	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Tasselseed2-like short-chain dehydrogenase/reductase	-	-	2.802e-26	-

Source	Gene names
Sma3	GSVIVT00023991001; GSVIVT00037431001; Os07g0691600; OsI_27430; P0034A04.106; POPTRDRAFT_560966; POPTRDRAFT_577103; POPTRDRAFT_913693; RCOM_0156780; Ts2; gynomonoecious sex form 1;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	immune response	GO:0006955	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	2-5-oligoadenylate synthetase, N-terminal	IPR006116	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002325666.1	predicted protein, partial [Populus trichocarpa]	4.0e-14	87%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUM5

Fln msg: Distance to subject end: 108 aas, your sequence is shorter than subject: 40 - 291

Fln protein: NMQRRVMVPRRDGCIISTASVAGILGGLGPHAYTAIKTCN

Protein Length: 41

Fln nts: AAACATGCAGCGACGGGTAATGGTTCCCAGGAGAGATGGGTGCATTATTTCTACGGCAAGTGTTGCAGGTATTCTGGGAGGACTTGGACCTCATGCATACACCGCTATCAAAACATGCAAT

Fln Alignment:

HA8LWWM01BKJ0R___RVMVPRRDGCIISTASVAGILGGLGPHAYTAIK
A9NUM5________________RVMIPRKKGCIISTASVAGILGGLTPYAYTASK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain