SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161734

Length: 282 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene161734
TGCAACGCAGTNACCTGCAGCAGCAATATAAGTGCCATCTGCCCTGCTGAATTGAGGGTTTCCGGCGGATGCGATAGCGCCTGCACTCATTTCAATACATCACAATATTGCGGTCGGACTAATTATTCGATGATTTTCAAGCGCCAGTGCCCCAAGGCTTACAGCTATGCACAGGACGATGCCAACACCACCTTCACTTGCCCCGGAAGCACCGACTATAAAGTCGTTTTCTGCGGCGGCAATGCCACCTCCCTGCAAGGACAAAATATTACAGTGGTGAGT

Ace file of the UniGene sp_v3.0_unigene161734 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acidic thaumatin-like protein n=13 Tax=Taxus x media RepID=A2TEG5_9CONI	-	-	5.0e-25	60%
FL-Next	tr=Thaumatin-like protein; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	61%
Sma3	Thaumatin-like protein	-	-	1.795e-35	-

Source	Gene names
Sma3	5A1A.16; AP24; Cry j 3.1; Cry j 3.2; Cry j 3.3; Cry j 3.6; Cry j 3.7; Cry j 3.8; GSVIVT00001102001; LOC_Os03g45960; LOC_Os12g43490; OLP; OSJNBa0034D21.26; OSJNBb0065L20.2; OSM; OSM-1h; OSM-3b; OSM-3f; OSM-5a; OSML; Os03g0661600; Os12g0630500; OsI_12888; O

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	serine-type endopeptidase inhibitor activity	GO:0004867	Molecular Function	-
Sma3	xenobiotic metabolic process	GO:0006805	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-
Sma3	Thaumatin, conserved site	IPR017949	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G11650.1	ATOSM34, OSM34 osmotin 34 chr4:7025127-7026113 REVERSE LENGTH=244	6.0e-23	47%
RefSeq	Arabidopsis thaliana	NP_192902.1	osmotin-like protein OSM34 [Arabidopsis thaliana]	7.0e-23	47%
RefSeq	Populus trichocarpa	XP_002325077.1	predicted protein [Populus trichocarpa]	1.0e-27	52%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q8H996

Fln msg: STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 94 - 232

Fln protein: CNAVTCSSNISAICPAELRVSGGCDSACTHFNTSQYCGRTNYSMIFKRQCPKAYSYAQDDANTTFTCPGSTDYKVVFCGGNATSLQGQNITVVS

Protein Length: 95

Fln nts: TGCAACGCAGTtACCTGCAGCAGCAATATAAGTGCCATCTGCCCTGCTGAATTGAGGGTTTCCGGCGGATGCGATAGCGCCTGCACTCATTTCAATACATCACAATATTGCGGTCGGACTAATTATTCGATGATTTTCAAGCGCCAGTGCCCCAAGGCTTACAGCTATGCACAGGACGATGCCAACACCACCTTCACTTGCCCCGGAAGCACCGACTATAAAGTCGTTTTCTGCGGCGGCAATGCCACCTCCCTGCAAGGACAAAATATTACAGTGGTGAGT

Fln Alignment:

HA8LWWM01B9XYC___VTCSSNISAICPAELRVSGGCDSACTHFNTSQYC---------GRTNYSMIFKRQCPKAYSYAQDDANTTFTCPGSTDYKVVFCG
Q8H996________________ITCLSHINSMCPAELKVNGGCKSACARYNTAQYCCTGASANNCGPTNYSKFFKGQCPQAYSYAKDDATSTFTCPSGTNYKVVFCG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain