SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161556

Length: 311 nt

UniGene Fasta

>sp_v3.0_unigene161556
AAACTACCTTTTCATATTTCAACAGGTGCTTCAGATACAAGTCTGGGAGTTGTATTAGGACAAAAAGATTTGATCCCTTATGCCATCTATTACACAAGCAAGAATTTGATTCCCATTGAGTTAAATTACACTGTAACTGAAAATGAATTCTTAGTCGTTGTTCATGCTATCAACAAGTTCAGACATTACATAACAGGCTATGAAACCTTTGTTCATACAGATCACTCTGCAATTTGGTACTTAATGAATAAACCTATTACTAATGGCAGAGTTACAAGATGGTTATTACTCCTGCAAGAATTCAACATCAC

Ace file of the UniGene sp_v3.0_unigene161556

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	52%

Source	Gene names
Sma3	19.t00014; 19.t00017; GSVIVT00000833001; GSVIVT00005459001; GSVIVT00005536001; GSVIVT00009118001; OSJNAa0053D03.14; OSJNBa0004A10.21; OSJNBa0091C12.6; OSJNBb0058J09.16; VITISV_000019; VITISV_000420; VITISV_000510; VITISV_000545; VITISV_001231; VITISV_0013

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Viral nucleic acid binding	IPR008891	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Ribosomal protein L33, conserved site	IPR018264	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AKH7

Fln msg: Distance to subject end: 334 aas, your sequence is shorter than subject: 103 - 550

Fln protein: KLPFHISTGASDTSLGVVLGQKDLIPYAIYYTSKNLIPIELNYTVTENEFLVVVHAINKFRHYITGYETFVHTDHSAIWYLMNKPITNGRVTRWLLLLQEFNI

Protein Length: 104

Fln nts: AAACTACCTTTTCATATTTCAACAGGTGCTTCAGATACAAGTCTGGGAGTTGTATTAGGACAAAAAGATTTGATCCCTTATGCCATCTATTACACAAGCAAGAATTTGATTCCCATTGAGTTAAATTACACTGTAACTGAAAATGAATTCTTAGTCGTTGTTCATGCTATCAACAAGTTCAGACATTACATAACAGGCTATGAAACCTTTGTTCATACAGATCACTCTGCAATTTGGTACTTAATGAATAAACCTATTACTAATGGCAGAGTTACAAGATGGTTATTACTCCTGCAAGAATTCAACATCAC

Fln Alignment:

HA8LWWM01AI3GG___KLPFHISTGASDTSLGVVLGQK-DLIPYAIYYTSKNLIPIELNYTVTENEFLVVVHAINKFRHYITGYETFVHTDHSAIWYLMNKPITNGRVTRWLLLLQEFNI
A5AKH7________________ELPFEVMCDSSDYAIGVVLGQREDGKPYVIYYASKSLNDAQRNYTTTEKELLVVVYALDKFRAYLIGSSIVVFTDHSALKYLLTKQDAKARLIRWILLLQEFNL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain