SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161507

Length: 339 nt

UniGene Fasta

>sp_v3.0_unigene161507
ATTTGGACCAGGCATGACTTTGGCCAGACCGATTGGCTTTACTGCAAACCATTCGCCCTGGCCCTTGTGTTGCTCCCTCTCGTTCTGTTACTCTGCTCCTTCCCCAAGTTCTGGGAATGGCGATCATACAAGAATTAGAGGCAGAGGGCAAAGATTTCGCGATGGTGAAGATGAGTGACCTGCCATTCCACGGGAATGAGAAATTCTCGACAGACACTTCTGTTGCGGAACGCCAACAGAAGGATCCCAAAGAGATCGCCAGAAGATATCAGCTACAACTATGCGAGAAAGCTAAGGAAGAGAATATCATAGTGTACCTAGAAACAGGGTGCGGAAATC

Ace file of the UniGene sp_v3.0_unigene161507

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribonuclease III, putative n=1 Tax=Ricinus communis RepID=B9SC13_RICCO	-	-	3.0e-08	56%
FL-Next	sp=Dicer-like protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G20320.1	DCL4, ATDCL4 dicer-like 4 chr5:6859571-6869068 REVERSE LENGTH=1702	7.0e-11	68%
RefSeq	Arabidopsis thaliana	NP_001190348.1	dicer-like protein 4 [Arabidopsis thaliana]	9.0e-11	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P84634

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1552 aas, your sequence is shorter than subject: 112 - 1702

Fln protein: LDQA*LWPDRLALLQTIRPGPCVAPSRSVTLLLPQVLGMAIIQELEAEGKDFAMVKMSDLPFHGNEKFSTDTSVAERQQKDPKEIARRYQLQLCEKAKEENIIVYLETGCGN

Protein Length: 113

Fln nts: ATTTGGACCAGGCATGACTTTGGCCAGACCGATTGGCTTTACTGCAAACCATTCGCCCTGGCCCTTGTGTTGCTCCCTCTCGTTCTGTTACTCTGCTCCTTCCCCAAGTTCTGGGAATGGCGATCATACAAGAATTAGAGGCAGAGGGCAAAGATTTCGCGATGGTGAAGATGAGTGACCTGCCATTCCACGGGAATGAGAAATTCTCGACAGACACTTCTGTTGCGGAACGCCAACAGAAGGATCCCAAAGAGATCGCCAGAAGATATCAGCTACAACTATGCGAGAAAGCTAAGGAAGAGAATATCATAGTGTACCTAGAAACAGGGTGCGGAAATC

Fln Alignment:

HA8LWWM01BMXS6___RQQKDPKEIARRYQLQLCEKAKEENIIVYLETGCG
P84634________________KMEKDPRKIARRYQVELCKKATEENVIVYLGTGCG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain