SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159473

Length: 196 nt

UniGene Fasta

>sp_v3.0_unigene159473
CAAATGCAGAAGCACTTTTGGCTGATGAGGAATTTACATTAACAATTGGTCCAACATTTAATGGTTCCTCTCTGCCCAGAATAGACTCATTAGAAGTTTATGGTCGAGCTAAGGATGATTTTGGTTGGAAGGAGAAACTTGATGCAGTGCTGGATATAGAGGCACATACATTGAATGGAGCAGCTGGAACTACAGG

Ace file of the UniGene sp_v3.0_unigene159473

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Auxin transport protein BIG; Oryza sativa subsp. japonica (Rice).	-	-	0.0	70%

Source	Gene names
Sma3	BIG; F14P3.9; GSVIVT00038089001; MtrDRAFT_AC151523g36v2; OsI_30520; OsJ_28507; PHYPADRAFT_122877; PHYPADRAFT_206047; RCOM_0790950; VITISV_016976;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	photomorphogenesis	GO:0009640	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, ZZ-type	IPR000433	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Zinc finger, N-recognin	IPR003126	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G02260.1	BIG, DOC1, TIR3, UMB1, ASA1, LPR1, CRM1 auxin transport protein (BIG) chr3:431152-448489 REVERSE LENGTH=5098	7.0e-22	71%
RefSeq	Arabidopsis thaliana	NP_186875.2	E3 ubiquitin-protein ligase UBR4 [Arabidopsis thaliana]	9.0e-22	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: B9G2A8

Fln msg: Distance to subject end: 2776 aas, your sequence is shorter than subject: 64 - 4965

Fln protein: NAEALLADEEFTLTIGPTFNGSSLPRIDSLEVYGRAKDDFGWKEKLDAVLDIEAHTLNGAAGTT

Protein Length: 65

Fln nts: CAAATGCAGAAGCACTTTTGGCTGATGAGGAATTTACATTAACAATTGGTCCAACATTTAATGGTTCCTCTCTGCCCAGAATAGACTCATTAGAAGTTTATGGTCGAGCTAAGGATGATTTTGGTTGGAAGGAGAAACTTGATGCAGTGCTGGATATAGAGGCACATACATTGAATGGAGCAGCTGGAACTACAGG

Fln Alignment:

HA8LWWM01CJ1SH___AEALLADEEFTLTIGPTFNGSSLPRIDSLEVYGRAKDDFGWKEKLDAVLDIEAHTLNGAAGT
B9G2A8________________AESLLADEEFTIVVGRTFDGSSIPRIDSIEVYGRAKDEFGWKEKMDAALDMEAHVLGGSSAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain