SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159394

Length: 109 nt

UniGene Fasta

>sp_v3.0_unigene159394
GTCGTGAAGAATATGTTTATATGGCCAAGCTTGCTGAGCAAGCTGAGCGTTATGATGAAATGGTTGAAGCCATGAAGAATGTTGCCAAGATGGACGTTGAATTAATTGT

Ace file of the UniGene sp_v3.0_unigene159394

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	14-3-3 domain containing protein	-	-	2.0e-15	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	14-3-3-like protein	-	-	3.166e-21	-

Source	Gene names
Sma3	14-3-3P20-4; 14-3-3P20-5; 1433; At1g22300; At1g26480; At1g26480/T1K7_14; At1g34760; CHLREDRAFT_185967; D75; FTT1; GF14C; GF14D; GRF10; GRF11; GRF12; GSVIVT00015228001; GSVIVT00027808001; GSVIVT00030052001; GSVIVT00035879001; Nt14-3-3epsilon; PHYPADRAFT_10

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	phospholipase A2 activity	GO:0004623	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein domain specific binding	GO:0019904	Molecular Function	-
Sma3	ATPase binding	GO:0051117	Molecular Function	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	14-3-3 protein	IPR000308	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22300.1	GRF10, 14-3-3EPSILON, GF14 EPSILON general regulatory factor 10 chr1:7879146-7881103 REVERSE LENGTH=254	2.0e-11	76%
RefSeq	Arabidopsis thaliana	NP_973884.1	14-3-3-like protein GF14 epsilon [Arabidopsis thaliana]	3.0e-11	76%
RefSeq	Populus trichocarpa	XP_002330721.1	predicted protein [Populus trichocarpa]	1.0e-12	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSS3

Fln msg: Distance to subject end: 217 aas, atg_distance in limit (1-15): atg_distance = 7, your sequence is shorter than subject: 29 - 259

Fln protein: MAKLAEQAERYDEMVEAMKNVAKMDVELI

Protein Length: 30

Fln nts: GTCGTGAAGAATATGTTTAT_-_ATGGCCAAGCTTGCTGAGCAAGCTGAGCGTTATGATGAAATGGTTGAAGCCATGAAGAATGTTGCCAAGATGGACGTTGAATTAATTGT

Fln Alignment:

HLKU4M004IX9SD___REEYVYMAKLAEQAERYDEMVEAMKNVAKMDVEL
C0PSS3________________RENHVYMAKLAEQAERYDEMVEAMKRVAKLDVEL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain