SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene159118

Length: 326 nt

UniGene Fasta

>sp_v3.0_unigene159118
GCAAGCAAAATCGGAAGAAGTCACACAGCAAGCAAAAGATGAGCGGCCAAGAGAGCACAAATTTTAAAGTCGTCCTTCTAGGCGAAGGTTGTGTTGGTAAAACTTCGTTAGTTTTACGATATTGCGACAATAAGTTCAATGATAACCACATCACGACCATTCAAGCTTCATTTTTACGAAAGCGTCTTACTATTGCGAATCAGCGTGTTACTTTAGCTATTTGGGACACAGCAGGACAGGAACGATTCCATGCTTTAGGTCCAATTTACTATCGCGACGCAGATGGCGCCCTATTGGTATATGATGTCACGGATAGAGATTCTTTC

Ace file of the UniGene sp_v3.0_unigene159118

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: ras-related protein Rab-21-like [Monodelphis domestica]	-	-	1.0e-38	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Rab21-family small GTPase	-	-	1.034e-11	-

Source	Gene names
Sma3	At1g22740; At1g43890; At2g21880; At3g12160; At4g09720; AtRAB18; AtRAB76; AtRAB77; CHLREDRAFT_81259; F28H19.15; F28J15.18; GSVIVT00005411001; GSVIVT00008846001; GSVIVT00025521001; Nt-rab7c; OJ1116_F05.1; OSTLU_14983; OSTLU_32150; OSTLU_38767; Os05g0341600;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-
Sma3		IPR014045	-	-
Sma3		IPR015595	-	-
Sma3		IPR015598	-	-
Sma3		IPR015599	-	-
Sma3		IPR015601	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G22740.1	RAB7, ATRABG3B, RAB75, RABG3B RAB GTPase homolog G3B chr1:8049247-8050494 FORWARD LENGTH=203	1.0e-25	52%
RefSeq	Arabidopsis thaliana	NP_173688.1	Ras-related protein Rab7 [Arabidopsis thaliana]	2.0e-25	52%
RefSeq	Populus trichocarpa	XP_002300895.1	predicted protein [Populus trichocarpa]	7.0e-24	51%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A948

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 96 - 209

Fln protein: MSGQESTNFKVVLLGEGCVGKTSLVLRYCDNKFNDNHITTIQASFLRKRLTIANQRVTLAIWDTAGQERFHALGPIYYRDADGALLVYDVTDRDSF

Protein Length: 97

Fln nts: GCAAGCAAAATCGGAAGAAGTCACACAGCAAGCAAAAG_-_ATGAGCGGCCAAGAGAGCACAAATTTTAAAGTCGTCCTTCTAGGCGAAGGTTGTGTTGGTAAAACTTCGTTAGTTTTACGATATTGCGACAATAAGTTCAATGATAACCACATCACGACCATTCAAGCTTCATTTTTACGAAAGCGTCTTACTATTGCGAATCAGCGTGTTACTTTAGCTATTTGGGACACAGCAGGACAGGAACGATTCCATGCTTTAGGTCCAATTTACTATCGCGACGCAGATGGCGCCCTATTGGTATATGATGTCACGGATAGAGATTCTTTC

Fln Alignment:

HLKU4M004JLF9U___FKVVLLGEGCVGKTSLVLRYCDNKFNDNHITTIQASFLRKRLTIANQRVTLAIWDTAGQERFHALGPIYYRDADGALLVYDVTDRDSF
D5A948________________FKLVLLGDGRVGKTSLVLRYVDDVFSDSQTATVQASYLTKRLNINGVVVTLSIWDTAGQERFHALGPIYYRDADAALLVYDIMDKDSF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain