SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158675

Length: 116 nt

UniGene Fasta

>sp_v3.0_unigene158675
AAGAGTCTTCTTCGACGTCGCCGCTGGTGGAAAAGTTCAAGGACGAATTGTCTTCGAGCTCTTTGCAGATGTTGCTCCAAAAAGTGCGGAGAACTTTAGATGTCTTTGCACTGGAG

Ace file of the UniGene sp_v3.0_unigene158675

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Blastocystis hominis RepID=D8M872_BLAHO	-	-	4.0e-10	76%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	71%
Sma3	Peptidyl-prolyl cis-trans isomerase	-	-	8.912e-20	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peptidylprolyl isomerase.	EC:5.2.1.8	-	1.173e-21	-

Source	Gene names
Sma3	AT3G63400; At2g38730; At3g63400; CYP22-1; CYP63; MAA21_30; MICPUCDRAFT_30266; MICPUN_58982; OsI_25113; OsJ_23316; Ot17g01890; PHATRDRAFT_18274; PHYPADRAFT_170556; PHYPADRAFT_208358; POPTRDRAFT_821113; PPI1; RCOM_0990970; THAPSDRAFT_31912;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	RNA splicing	GO:0008380	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G16600.1	ROC3 rotamase CYP 3 chr2:7200862-7201383 FORWARD LENGTH=173	4.0e-12	63%
RefSeq	Arabidopsis thaliana	NP_001077901.1	Peptidyl-prolyl cis-trans isomerase CYP19-1 [Arabidopsis thaliana]	4.0e-12	63%
RefSeq	Populus trichocarpa	XP_002313736.1	predicted protein [Populus trichocarpa]	8.0e-14	71%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1XG52

Fln msg: Distance to subject end: 129 aas, atg_distance in limit (1-15): atg_distance = 5, W2: There is no M at the beginning, your sequence is shorter than subject: 38 - 171

Fln protein: RVFFDVAAGGKVQGRIVFELFADVAPKSAENFRCLCTG

Protein Length: 39

Fln nts: AAGAGTCTTCTTCGACGTCGCCGCTGGTGGAAAAGTTCAAGGACGAATTGTCTTCGAGCTCTTTGCAGATGTTGCTCCAAAAAGTGCGGAGAACTTTAGATGTCTTTGCACTGGAG

Fln Alignment:

HLKU4M004I8PV0___RVFFDVAAGGKVQGRIVFELFADVAPKSAENFRCLCTG
Q1XG52________________RVFFEMAVGGAPAGRIVMELYADVTPKTAENFRALCTG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain