SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158396

Length: 310 nt

UniGene Fasta

>sp_v3.0_unigene158396
TATGGACGCTGTGGCTTACATGCAGCAGCGCTTCTTCAACGACTATCCGCGCCATCCCAAAGAAGACGAGTACAACTTCGCCACGCAGTCGACCTTCAAGCCTACACAGATCTCCTGCTCCGAGGGCTCGCTGAACATGATCCCTCGTGACTGTACCATCCAGGGAGACATCCGCTCTGCGCCCTTCTACGACATCAACGACATGATGCGGTCCATCGAGCAGTACGTGAAGGACGTCAGCGCTGATCCCTCCATCGTCGAGAACCCCGCTCAGCGAGGCCCACACACCAAGTACACCATCCCTGATGAG

Ace file of the UniGene sp_v3.0_unigene158396

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acetylornithine deacetylase n=1 Tax=Ectocarpus siliculosus RepID=D8LRK6_ECTSI	-	-	3.0e-24	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%

Source	Gene names
Sma3	AOD1; CHLREDRAFT_155546;

Source	GOs	Term	Type	Identity
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase M20	IPR002933	-	0.0	-
Sma3	Peptidase M20, dimerisation	IPR011650	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUW9

Fln msg: Distance to subject end: 102 aas, your sequence is shorter than subject: 103 - 431

Fln protein: MDAVAYMQQRFFNDYPRHPKEDEYNFATQSTFKPTQISCSEGSLNMIPRDCTIQGDIRSAPFYDINDMMRSIEQYVKDVSADPSIVENPAQRGPHTKYTIPDE

Protein Length: 104

Fln nts: TATGGACGCTGTGGCTTACATGCAGCAGCGCTTCTTCAACGACTATCCGCGCCATCCCAAAGAAGACGAGTACAACTTCGCCACGCAGTCGACCTTCAAGCCTACACAGATCTCCTGCTCCGAGGGCTCGCTGAACATGATCCCTCGTGACTGTACCATCCAGGGAGACATCCGCTCTGCGCCCTTCTACGACATCAACGACATGATGCGGTCCATCGAGCAGTACGTGAAGGACGTCAGCGCTGATCCCTCCATCGTCGAGAACCCCGCTCAGCGAGGCCCACACACCAAGTACACCATCCCTGATGAG

Fln Alignment:

HLKU4M004JL19N___MDAVAYMQQRFFNDYPRHPKEDEYNFATQSTFKPTQISCSEGSLNMIPRDCTIQGDIRSAPFYDINDMMRSIEQYVKDVSADPSIVENPAQRGPHTKYTIPDE
A9NUW9________________MEALEEIQKRFYNDFPAHPKEELYQFATPSTMKPTQWSYPGGGLNQIPGECTISGDVRLTPFYSCADVVKKLKEYVDNINAN---IEKLKTRGPVSKYVLPEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain