SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158305

Length: 246 nt

UniGene Fasta

>sp_v3.0_unigene158305
ATCAAAATGAACGGTGATAACGAATACGACGGGCGGTTTAAATTGCTAATAATTGGTGATTCTGGTGTTGGCAAAACCAGTTTATTGTCGAGCATTGCAAATGACACAGAATCTACCGCAACACAAGTGAAAAACCGAACTGTGGAAATTGCTGGCAAAACTATCAAACTTCAAATTTGGGACTCTACAACGTCTCAAGAACAATTTCAAAGAGTTCCTTCTTCTCGTTTCTATCGCTCAGCCCAT

Ace file of the UniGene sp_v3.0_unigene158305

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GTP-binding protein of the rab family n=9 Tax=Saccharomycetales RepID=A3LRF3_PICST	-	-	8.0e-14	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Small GTP-binding protein	-	-	3.395e-11	-

Source	Gene names
Sma3	24.t00078; 27.t00047; 40.t00023; ARA-5; AT4g17530; AT5g47200/MQL5_5; ATFP8; At1g02130; At3g11730; At4g17530; At5g47200; At5g47201; CHLREDRAFT_60490; F26K24.2; GSVIVT00011421001; GSVIVT00014195001; GSVIVT00035296001; LeRab1A; LeRab1B; LeRab1C; MICPUCDRAFT_

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR013753	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G47200.1	ATRABD2B, ATRAB1A, RAB1A RAB GTPase homolog 1A chr5:19167029-19168718 FORWARD LENGTH=202	2.0e-17	54%
RefSeq	Arabidopsis thaliana	NP_568678.1	RAB GTPase-1A [Arabidopsis thaliana]	2.0e-17	54%
RefSeq	Populus trichocarpa	XP_002328790.1	predicted protein [Populus trichocarpa]	2.0e-17	53%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKP5

Fln msg: Distance to subject end: 120 aas, your sequence is shorter than subject: 80 - 202

Fln protein: MNGDNEYDGRFKLLIIGDSGVGKTSLLSSIANDTESTATQVKNRTVEIAGKTIKLQIWDSTTSQEQFQRVPSSRFYRSAH

Protein Length: 81

Fln nts: ATCAAA_-_ATGAACGGTGATAACGAATACGACGGGCGGTTTAAATTGCTAATAATTGGTGATTCTGGTGTTGGCAAAACCAGTTTATTGTCGAGCATTGCAAATGACACAGAATCTACCGCAACACAAGTGAAAAACCGAACTGTGGAAATTGCTGGCAAAACTATCAAACTTCAAATTTGGGACTCTACAACGTCTCAAGAACAATTTCAAAGAGTTCCTTCTTCTCGTTTCTATCGCTCAGCCCAT

Fln Alignment:

HLKU4M004I9AY4___EYDGRFKLLIIGDSGVGKTSLLSSIANDT------ESTATQVKNRTVEIAGKTIKLQIWDSTTSQEQFQRVPSSRFYRSAH
A9NKP5________________EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDGKTIKLQIWD-TAGQERFRTITSS-YYRGAH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain