SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene158293

Length: 334 nt

UniGene Fasta

>sp_v3.0_unigene158293
AACTGCGCTATCGTCATGGAAACCAAATACGCCACAAGGCTTTGGTATTATTCACGCCATGCACCCTGATCCTTATAGAGGACCATGGGCTGGTCATTCTGATTGTGCTACTAAATATGCTAATGATGTGAAGGATATCATCACTTATAATACTAGTGGTAAAATTGGAGGCTTTATTGCAGAATACATTCAAGGAGTTGGAGGATCTGTAGTATTACCTGAGGGGTATTTGAAACAAGCTTACGATCATGTTCACAAAGCTGGTGGTCTTTGTATTTCTGACGAAGTTCAAACTGGTTTTGGACGTTTGGGAACTGATTTTTGGGCATTTCAA

Ace file of the UniGene sp_v3.0_unigene158293

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aminotransferase class-III n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKX6_9BACT	-	-	1.0e-33	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Alanine-glyoxylate aminotransferase, putative	-	-	1.165e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Alanine--glyoxylate transaminase.	EC:2.6.1.44	-	4.587e-15	-

Source	KEGGs	Term	e value	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	4.587e-15	%
Sma3	Glycine, serine and threonine metabolism	00260	4.587e-15	%
Sma3	Metabolic pathways	01100	4.587e-15	%

Source	Gene names
Sma3	AGT2; AGT3; At2g38400; At3g08860; At4g39660; CHLREDRAFT_133057; GSVIVT00019422001; GSVIVT00023979001; GSVIVT00037451001; LOC_Os03g07570; LOC_Os03g21960; Os03g0171900; Os03g0338000; Os05g0475400; OsI_10205; OsI_11479; OsI_20323; OsJ_09593; OsJ_10768; OsJ_1

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	alanine-glyoxylate transaminase activity	GO:0008453	Molecular Function	-
Sma3	transaminase activity	GO:0008483	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	photorespiration	GO:0009853	Biological Process	-
Sma3	arginine catabolic process to glutamate	GO:0019544	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase class-III	IPR005814	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G08860.1	PYD4 PYRIMIDINE 4 chr3:2696754-2699087 REVERSE LENGTH=481	2.0e-35	57%
RefSeq	Arabidopsis thaliana	NP_187498.1	PYRIMIDINE 4 [Arabidopsis thaliana]	2.0e-35	57%
RefSeq	Populus trichocarpa	XP_002310591.1	predicted protein [Populus trichocarpa]	3.0e-36	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NW66

Fln msg: Distance to subject end: 169 aas, your sequence is shorter than subject: 111 - 482

Fln protein: TALSSWKPNTPQGFGIIHAMHPDPYRGPWAGHSDCATKYANDVKDIITYNTSGKIGGFIAEYIQGVGGSVVLPEGYLKQAYDHVHKAGGLCISDEVQTGFGRLGTDFWAFQ

Protein Length: 112

Fln nts: AACTGCGCTATCGTCATGGAAACCAAATACGCCACAAGGCTTTGGTATTATTCACGCCATGCACCCTGATCCTTATAGAGGACCATGGGCTGGTCATTCTGATTGTGCTACTAAATATGCTAATGATGTGAAGGATATCATCACTTATAATACTAGTGGTAAAATTGGAGGCTTTATTGCAGAATACATTCAAGGAGTTGGAGGATCTGTAGTATTACCTGAGGGGTATTTGAAACAAGCTTACGATCATGTTCACAAAGCTGGTGGTCTTTGTATTTCTGACGAAGTTCAAACTGGTTTTGGACGTTTGGGAACTGATTTTTGGGCATTTCAA

Fln Alignment:

HLKU4M004IUZ2H___TALSSWKPNTPQGFGIIHAMHPDPYRGPWAGHSDCATKYANDVKDIITYNTSGKIGGFIAEYIQGVGGSVVLPEGYLKQAYDHVHKAGGLCISDEVQTGFGRLGTDFWAFQ
A9NW66________________TSQSKWKFNIVQS-GVHHAVNPNPYRGVFGSDGP---QYAKDVQDIIEFGTTGRVAGFIAETIQGVGGAVELAPGYLPAVYDSVRKAGGVCISDEVQTGFGRMGSHYWGFE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain