SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157768

Length: 356 nt

UniGene Fasta

>sp_v3.0_unigene157768
AATAAGAATACATCAGCAATCTGCTTTCTTAGAAAAAAAGTCATTTGTTACATACATCTCAAGCTACATAATGGGTCGCGACTGGTCAAAGATTGATACCTTGTTGCAAGGAATTGACAGATACAATCCAAACAACATTCCTACTCTTGAAGAATACGTGCAATATCAAGTCGAAGAGCGCCACTACAACTTGGATGCTAATTTGGCATTGCTTAAACTATACCAGTTTAATCCAAATCACTTTCAAACCTTGGTGACAGCTCACATTTTGTTGAAGGCGTTGACTAATCTGCCGCATGCTGACTTTGTTCTCTGCAAGTGTCTCATTGACAACTCAAGACTTGAAGACGAAGGGC

Ace file of the UniGene sp_v3.0_unigene157768

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Eukaryotic translation initiation factor 3 subunit K n=2 Tax=Anura RepID=EIF3K_XENLA	-	-	4.0e-27	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33250.1	EIF3K, TIF3K1, ATTIF3K1 eukaryotic translation initiation factor 3K chr4:16039066-16040617 REVERSE LENGTH=226	9.0e-14	45%
RefSeq	Arabidopsis thaliana	NP_195051.1	translation initiation factor 3 subunit K [Arabidopsis thaliana]	1.0e-13	45%
RefSeq	Populus trichocarpa	XP_002326147.1	predicted protein [Populus trichocarpa]	5.0e-18	50%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUS1

Fln msg: Distance to subject end: 129 aas, your sequence is shorter than subject: 95 - 234

Fln protein: MGRDWSKIDTLLQGIDRYNPNNIPTLEEYVQYQVEERHYNLDANLALLKLYQFNPNHFQTLVTAHILLKALTNLPHADFVLCKCLIDNSRLEDEG

Protein Length: 96

Fln nts: AATAAGAATACATCAGCAATCTGCTTTCTTAGAAAAAAAGTCATTTGTTACATACATCTCAAGCTACATA_-_ATGGGTCGCGACTGGTCAAAGATTGATACCTTGTTGCAAGGAATTGACAGATACAATCCAAACAACATTCCTACTCTTGAAGAATACGTGCAATATCAAGTCGAAGAGCGCCACTACAACTTGGATGCTAATTTGGCATTGCTTAAACTATACCAGTTTAATCCAAATCACTTTCAAACCTTGGTGACAGCTCACATTTTGTTGAAGGCGTTGACTAATCTGCCGCATGCTGACTTTGTTCTCTGCAAGTGTCTCATTGACAACTCAAGACTTGAAGACGAAGGGC

Fln Alignment:

HLKU4M004ILOFO___LQGIDRYNPNNIPTLEEYVQYQVEERHYNLDANLALLKLYQFNPNHFQTLVTAHILLKALTNLPHADFVLCKCLI
A9NUS1________________LMAVNPYNPDLLPDLEAYVQEQVMSNTYNLDANLCLLRLYQFEPARMSMQIVARILVKALMAMPAPDFNLCMFLI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain