SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157423

Length: 339 nt

UniGene Fasta

>sp_v3.0_unigene157423
CATTTAACTTAACATGCCTCCCAAGAAGACCCCAGCTGCTGAAGGTGCCAAAGCTAAAGCCCCAAAGGCCGAAGGCGGTGAAAAGAAGTCCAGAAGAAGAAGAAACGAAACTTTCTCTCTTTACATCTACAAAGTCCTTAAACAAGTCCACCCAGATACCGGTATCTCCAAGAAAGCCATGAACATTATGAACTCTTTCATCAACGACATCTTCGAAAAGACCGCTTTGGAATCCAGCAAGCTCGTTAGATACAACAGAAAGAGAACTTTGTCATCCAGGGAAATCCAAACTGCTGTCAAGCTCCTCCTCCCAGGAGAATTGGCCAAGCACGCTATTTC

Ace file of the UniGene sp_v3.0_unigene157423

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H2B.1 n=3 Tax=Tetrahymena RepID=H2B1_TETTH	-	-	8.0e-32	79%
FL-Next	sp=Histone H2B; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Histone H2B	-	-	3.877e-36	-

Source	Gene names
Sma3	ABE2; At1g07790; At2g28720; At2g37470; At3g09480; At3g45980; At3g46030; At3g53650; At5g02570; At5g22880; At5g59910; CHLREDRAFT_100005; CHLREDRAFT_100008; CHLREDRAFT_100162; CHLREDRAFT_100236; CHLREDRAFT_100672; CHLREDRAFT_100722; CHLREDRAFT_102205; CHLRED

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-
Sma3	mitotic chromosome condensation	GO:0007076	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H2B	IPR000558	-	-
Sma3	Histone core	IPR007125	-	-
Sma3	Histone-fold	IPR009072	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G46030.1	HTB11 Histone superfamily protein chr3:16913614-16914051 REVERSE LENGTH=145	4.0e-37	73%
RefSeq	Arabidopsis thaliana	NP_190189.1	histone H2B [Arabidopsis thaliana]	6.0e-37	73%
RefSeq	Populus trichocarpa	XP_002314196.1	histone 2, partial [Populus trichocarpa]	5.0e-37	73%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWP2

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 112 - 162

Fln protein: I*LNMPPKKTPAAEGAKAKAPKAEGGEKKSRRRRNETFSLYIYKVLKQVHPDTGISKKAMNIMNSFINDIFEKTALESSKLVRYNRKRTLSSREIQTAVKLLLPGELAKHAI

Protein Length: 113

Fln nts: CATTTAACTTAACATGCCTCCCAAGAAGACCCCAGCTGCTGAAGGTGCCAAAGCTAAAGCCCCAAAGGCCGAAGGCGGTGAAAAGAAGTCCAGAAGAAGAAGAAACGAAACTTTCTCTCTTTACATCTACAAAGTCCTTAAACAAGTCCACCCAGATACCGGTATCTCCAAGAAAGCCATGAACATTATGAACTCTTTCATCAACGACATCTTCGAAAAGACCGCTTTGGAATCCAGCAAGCTCGTTAGATACAACAGAAAGAGAACTTTGTCATCCAGGGAAATCCAAACTGCTGTCAAGCTCCTCCTCCCAGGAGAATTGGCCAAGCACGCTATTTC

Fln Alignment:

HLKU4M004I3NNJ___ETFSLYIYKVLKQVHPDTGISKKAMNIMNSFINDIFEKTALESSKLVRYNRKRTLSSREIQTAVKLLLPGELAKHAI
A9NWP2________________ETYRIYVYKVLKQVHPDIGISSKAMSIMNSFVNDIFEKVAAESSKLTRYGKRDTLSSREVQTAVKLVLPGELAKHAV

SSRs (tot: 1)

Start position	End position	Sequence	Length
92	104	AGA AGA AGA AGA A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain