SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157356

Length: 353 nt

UniGene Fasta

>sp_v3.0_unigene157356
AAAAACTTTCACCGATTGCTTTAACTGCCTTCCCATTGCTGCTATCATCGACGAGAAGATCTTCTGCATGCATGGGGGTCTCTCTCCCGATTTGAAGACTATGGAACAAATCAGAAGAATTGTTAGACCAACAGACGTGCCCGACACTGGTTTGTTGTGCGATTTGCTCTGGTCAGACCCTGACAAAGACACCCAAGGATGGGGAGAAAACGACAGAGGTGTTTCATTCACCTTTGGCGCTGACGTTGTTACAGCTTTCCTGAAGAGACAAGACCTTGACTTGATTTGCCGAGCTCATCAGGTGGTAGAGGATGGTTACGAATTTTTCGCAAAGCGACAGCTGGTGACGCTTT

Ace file of the UniGene sp_v3.0_unigene157356

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine/threonine-protein phosphatase PP1-beta catalytic subunit [Danio rerio] gb\|AAI16540.1\| Protein phosphatase 1, catalytic subunit, beta isoform [Danio rerio]	-	-	92%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Sma3	Serine/threonine protein phosphatase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	-

Source	Gene names
Sma3	46C02.14; AT2G39840; At1g59830; At1g64040; At1g69960; At2g29400; At2g39840; At2g42500; At3g05580; At3g46820; At4g11240; At4g26720; At5g27840; At5g43380; At5g55260; At5g59160; B1051E10.26; B1144B06.13; CHLREDRAFT_132486; CHLREDRAFT_160030; CHLREDRAFT_19356

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plastid stroma	GO:0009532	Cellular Component	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S16	IPR000307	-	-
Sma3	Metallophosphoesterase domain	IPR004843	-	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G11240.1	TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein chr4:6847333-6849032 FORWARD LENGTH=322	76%
RefSeq	Arabidopsis thaliana	NP_567375.1	serine/threonine-protein phosphatase PP1 isozyme 6 [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002298008.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA89

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 117 - 325

Fln protein: KTFTDCFNCLPIAAIIDEKIFCMHGGLSPDLKTMEQIRRIVRPTDVPDTGLLCDLLWSDPDKDTQGWGENDRGVSFTFGADVVTAFLKRQDLDLICRAHQVVEDGYEFFAKRQLVTL

Protein Length: 118

Fln nts: AAAAACTTTCACCGATTGCTTTAACTGCCTTCCCATTGCTGCTATCATCGACGAGAAGATCTTCTGCATGCATGGGGGTCTCTCTCCCGATTTGAAGACTATGGAACAAATCAGAAGAATTGTTAGACCAACAGACGTGCCCGACACTGGTTTGTTGTGCGATTTGCTCTGGTCAGACCCTGACAAAGACACCCAAGGATGGGGAGAAAACGACAGAGGTGTTTCATTCACCTTTGGCGCTGACGTTGTTACAGCTTTCCTGAAGAGACAAGACCTTGACTTGATTTGCCGAGCTCATCAGGTGGTAGAGGATGGTTACGAATTTTTCGCAAAGCGACAGCTGGTGACGCTTT

Fln Alignment:

HLKU4M004ISZTZ___KTFTDCFNCLPIAAIIDEKIFCMHGGLSPDLKTMEQIRRIVRPTDVPDTGLLCDLLWSDPDKDTQGWGENDRGVSFTFGADVVTAFLKRQDLDLICRAHQVVEDGYEFFAKRQLVTL
D5AA89________________KIFTDCFNCLPVAALIDEKILCMHGGLSPDLQSLDQIRNIARPTDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGPDKVTEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain