SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157343

Length: 235 nt

UniGene Fasta

>sp_v3.0_unigene157343
GGCATACTATACTCCTCACGTTGACACCGGCGATTACATCATCGTGATCAACGCAGAAAAAGTGATCCTGACCGGCAACAAAATGGATCAGAAAATTTATGACCACTTCACTGGTTACCCAGGTGGTCTGAAAGAAGAAACTGCATCTAACCTGCAGAAACGCCGCCCCGAGGTTGTTATCGAAAGAGCGGTAAAAGGAATGCTTCCTAAAAACAGGCTGGGTCGCAAGATGTAC

Ace file of the UniGene sp_v3.0_unigene157343

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	50S ribosomal protein L13 n=1 Tax=Peptoniphilus sp. oral taxon 386 str. F0131 RepID=D7N5J8_9FIRM	-	-	1.0e-24	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	50S ribosomal protein L13, chloroplastic	-	-	1.591e-15	-

Source	Gene names
Sma3	At1g78630; CHLREDRAFT_195619; EMB1473; GSVIVT00027910001; Heak293_Cp124; MICPUN_97280; Os01g0749200; OsI_03735; OsJ_03455; P0481E12.38; PHYPADRAFT_35792; PHYPADRAFT_47260; PHYPADRAFT_47557; POPTRDRAFT_235464; PRPL13; RCOM_0216630; RPL13; T30F21.4; rpl13;

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L13	IPR005822	-	0.0	-
Sma3	Ribosomal protein L13, bacterial-type	IPR005823	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G78630.1	emb1473 Ribosomal protein L13 family protein chr1:29575997-29577406 FORWARD LENGTH=241	8.0e-24	53%
RefSeq	Arabidopsis thaliana	NP_177984.1	50S ribosomal protein L13 [Arabidopsis thaliana]	1.0e-23	53%
RefSeq	Populus trichocarpa	XP_002316846.1	predicted protein, partial [Populus trichocarpa]	5.0e-24	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUT8

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 78 - 249

Fln protein: AYYTPHVDTGDYIIVINAEKVILTGNKMDQKIYDHFTGYPGGLKEETASNLQKRRPEVVIERAVKGMLPKNRLGRKMY

Protein Length: 79

Fln nts: GGCATACTATACTCCTCACGTTGACACCGGCGATTACATCATCGTGATCAACGCAGAAAAAGTGATCCTGACCGGCAACAAAATGGATCAGAAAATTTATGACCACTTCACTGGTTACCCAGGTGGTCTGAAAGAAGAAACTGCATCTAACCTGCAGAAACGCCGCCCCGAGGTTGTTATCGAAAGAGCGGTAAAAGGAATGCTTCCTAAAAACAGGCTGGGTCGCAAGATGTAC

Fln Alignment:

HLKU4M004I9GIU___AYYTPHVDTGDYIIVINAEKVILTGNKMDQKIYDHFTGYPGGLKEETASNLQKRRPEVVIERAVKGMLPKNRLGRKMY
A9NUT8________________ATFTPSVDMGAYVIVVNAEKVAVSGNKRTTKLYRRHSGRPGGLKVETFDHLQKRIPERIVEHAVRGMLPKGRLGRRLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain