SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157227

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene157227
ACGTCAACGTCAACAACAACTTGCTTGCTAGAGCCAAGGAAATCATTGCTGAGCTGAATGCTGCCGGAGTTAGAGCTCACCTTGATGACAGAGACAACTACAACCCTGGATTCAAGTACAATCACTGGGAACTCAAGGGTGTTCCAATCAGACTTGAATTTGGACCAAAGGACTTTGAAAACAAGTCAATTGTTGCTGTCAGAAGAGACACCAAGGCCAAGGAACCATTGAACT

Ace file of the UniGene sp_v3.0_unigene157227

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GH23578 n=1 Tax=Drosophila grimshawi RepID=B4JT86_DROGR	-	-	4.0e-18	65%
FL-Next	tr=Prolyl-tRNA synthetase; Coccomyxa subellipsoidea C-169.	-	-	0.0	63%
Sma3	Bifunctional aminoacyl-tRNA synthetase	-	-	1.18e-09	-

Source	Gene names
Sma3	EPRS; GSVIVT00028238001; MICPUCDRAFT_48477; MICPUN_84342; OSTLU_19561; PHATRDRAFT_23547; POPTRDRAFT_552617;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	proline-tRNA ligase activity	GO:0004827	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	prolyl-tRNA aminoacylation	GO:0006433	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Prolyl-tRNA synthetase, class IIa	IPR002316	-	-
Sma3	Anticodon-binding	IPR004154	-	-
Sma3	Prolyl-tRNA synthetase, class IIa, archaeal-type	IPR004499	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	YbaK/aminoacyl-tRNA synthetase-associated domain	IPR007214	-	-
Sma3	Prolyl-tRNA synthetase, class II, C-terminal	IPR016061	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G62120.1	Class II aaRS and biotin synthetases superfamily protein chr3:23001227-23003849 REVERSE LENGTH=530	2.0e-17	57%
RefSeq	Arabidopsis thaliana	NP_850736.1	prolyl-tRNA synthetase [Arabidopsis thaliana]	3.0e-17	57%
RefSeq	Populus trichocarpa	XP_002301553.1	predicted protein [Populus trichocarpa]	1.0e-18	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I0YYU7

Fln msg: Distance to subject end: 111 aas, your sequence is shorter than subject: 77 - 472

Fln protein: VNVNNNLLARAKEIIAELNAAGVRAHLDDRDNYNPGFKYNHWELKGVPIRLEFGPKDFENKSIVAVRRDTKAKEPLN

Protein Length: 78

Fln nts: ACGTCAACGTCAACAACAACTTGCTTGCTAGAGCCAAGGAAATCATTGCTGAGCTGAATGCTGCCGGAGTTAGAGCTCACCTTGATGACAGAGACAACTACAACCCTGGATTCAAGTACAATCACTGGGAACTCAAGGGTGTTCCAATCAGACTTGAATTTGGACCAAAGGACTTTGAAAACAAGTCAATTGTTGCTGTCAGAAGAGACACCAAGGCCAAGGAACCATTGAACT

Fln Alignment:

HLKU4M004JU9SI___LLARAKEIIAELNAAGVRAHLDDRDNYNPGFKYNHWELKGVPIRLEFGPKDFENKSIVAVRRDTKAKE
I0YYU7________________LTSTTADLVAQLKQAGVRVQCDDRDNYRPGWKYNHWEVKGVPIRLELGFKDLEKKSAVLARRDTGAKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain