SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene157123

Length: 171 nt

UniGene Fasta

>sp_v3.0_unigene157123
ACAAAGTACAAGCAACAAATGTCTCTTCAAGTTACAAATCCCAAGAATCCAATCGTCTTCTTTGACATTACGATTGGCAATGTTGAAGTTGGTCGAATCAAATTCGAGCTCTTTGCCGACTATTGCCCAAGGACATGCGAGAATTTTAGACAATTTTGCACAGGTGAATGC

Ace file of the UniGene sp_v3.0_unigene157123

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=1 Tax=Anoplopoma fimbria RepID=C3KH29_ANOFI	-	-	1.0e-14	72%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	0.0	72%
Sma3	Peptidyl-prolyl cis-trans isomerase	-	-	2.8026e-45	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	-

Source	Gene names
Sma3	46C02.10; At2g38730; CYN22; CYP22-1; Cyp; Cyp1; GSVIVT00030885001; LOC_Os03g59700; MICPUCDRAFT_30266; MICPUN_58982; OSJNBb0033J23.12; OSTLU_28138; Os03g0811600; OsI_14024; OsI_14027; OsI_25113; OsJ_13071; OsJ_23316; Ot17g01890; PHYPADRAFT_170120; PHYPADRA

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	-
Sma3	PAPA-1-like conserved region	IPR006880	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G38730.1	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein chr2:16192579-16194038 REVERSE LENGTH=199	6.0e-19	72%
RefSeq	Arabidopsis thaliana	NP_181407.1	peptidyl-prolyl isomerase H (cyclophilin H) [Arabidopsis thaliana]	7.0e-19	72%
RefSeq	Populus trichocarpa	XP_002304808.1	predicted protein [Populus trichocarpa]	6.0e-20	72%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9ZRQ9

Fln msg: Distance to subject end: 127 aas, atg_distance in limit (1-15): atg_distance = 6, your sequence is shorter than subject: 51 - 189

Fln protein: MSLQVTNPKNPIVFFDITIGNVEVGRIKFELFADYCPRTCENFRQFCTGEC

Protein Length: 52

Fln nts: ACAAAGTACAAGCAACAA_-_ATGTCTCTTCAAGTTACAAATCCCAAGAATCCAATCGTCTTCTTTGACATTACGATTGGCAATGTTGAAGTTGGTCGAATCAAATTCGAGCTCTTTGCCGACTATTGCCCAAGGACATGCGAGAATTTTAGACAATTTTGCACAGGTGAATGC

Fln Alignment:

HLKU4M004JSFUA___QVTNPKNPIVFFDITIGNVEVGRIKFELFADYCPRTCENFRQFCTGE
Q9ZRQ9________________KLPNPKNPVVFFDVTIGTIPAGRIKMELFADIVPRTAENFRQFCTGE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain