SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene156985

Length: 229 nt

UniGene Fasta

>sp_v3.0_unigene156985
GGACGTCGAAAGAGATAGAATTCAAAAGGCTGGAGGCTATATTATTGACGGAAGAGTAAATGGTAACTTGAACTTGTCAAGAGCCATCGGAGATTTTGAGTACAAGAAGAATACTGAAAAGGCCCCCGGTGAGCAATTGATTTCCGCTGTTCCCGATATTAAAAAGAGAACTATGACTGCTGATGATCAACTTATGGTCCTTGGTTGCGATGGTATTTGGGAATGTCTT

Ace file of the UniGene sp_v3.0_unigene156985

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein phosphatase 2C n=1 Tax=Miamiensis avidus RepID=C9E7A0_9CILI	-	-	3.0e-19	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	7.928e-06	-

Source	Gene names
Sma3	GSVIVT00032788001; LOC_Os02g08364; LOC_Os06g44210; Os02g0180000; Os06g0651600; OsI_23932; OsJ_05622; OsJ_22185; P0453H04.39-1; P0453H04.39-2; P0544B02.31; POPTRDRAFT_554898; POPTRDRAFT_587195; RCOM_0920800; VITISV_005154; pp2c-1;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G31860.1	Protein phosphatase 2C family protein chr4:15406685-15408589 REVERSE LENGTH=357	3.0e-22	51%
RefSeq	Arabidopsis thaliana	NP_194914.1	putative protein phosphatase 2C 60 [Arabidopsis thaliana]	4.0e-22	51%
RefSeq	Populus trichocarpa	XP_002332050.1	predicted protein [Populus trichocarpa]	8.0e-25	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNL4

Fln msg: Distance to subject end: 59 aas, your sequence is shorter than subject: 76 - 337

Fln protein: DVERDRIQKAGGYIIDGRVNGNLNLSRAIGDFEYKKNTEKAPGEQLISAVPDIKKRTMTADDQLMVLGCDGIWECL

Protein Length: 77

Fln nts: GGACGTCGAAAGAGATAGAATTCAAAAGGCTGGAGGCTATATTATTGACGGAAGAGTAAATGGTAACTTGAACTTGTCAAGAGCCATCGGAGATTTTGAGTACAAGAAGAATACTGAAAAGGCCCCCGGTGAGCAATTGATTTCCGCTGTTCCCGATATTAAAAAGAGAACTATGACTGCTGATGATCAACTTATGGTCCTTGGTTGCGATGGTATTTGGGAATGTCTT

Fln Alignment:

HLKU4M004I7VZZ___ERDRIQKAGGYIIDGRVNGNLNLSRAIGDFEYKKNTEKAPGEQLISAVPDIKKRTMTADDQLMVLGCDGIWECL
A9NNL4________________EKERIIQAGGFIHAGRVNGSLNLARAIGDMELKQNKFLPPEKQIITACPDINVVELCEDDEFLVLACDGVWDVM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain